Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Theobroma_20cacao_20[refseq_20GCF_5F000208745.1_202016-07-09] 431 sequences; 324,879,930 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq4 127 3e-24 seq1 123 4e-23 seq8 98.7 1e-15 >seq4 Length=31929104 Score = 127 bits (140), Expect = 3e-24 Identities = 424/656 (65%), Gaps = 24/656 (4%) Strand=Plus/Minus Query 46324 GACATAACTCCCATTTTTTGGTATTCACCTACACGTTTCTCGAAAAAATTAGTTTTGCCT 46383 ||||| || || ||| ||||| || || || | ||||||||| ||||||||||| ||| Sbjct 2302357 GACATGACCGCCGCTTTCTGGTACTCTCCAACTCTTTTCTCGAAGAAATTAGTTTTACCT 2302298 Query 46384 TCCAATGATATATTTTCCATAAAATCAAACGGATTAGTAACATTATAAAtttttttAAAT 46443 | ||| || || |||||| ||||||| || |||| ||||| || || || | Sbjct 2302297 TGCAACGAAATCAGTTCCATCCAATCAAAAGGGTTAGCCACATTGTACATCTTCCCGTAC 2302238 Query 46444 CCTAATTCTGAAATCAGTCTATCTGCAACGAATTCTATATACGTTTTCATCATTTCACAA 46503 || || || | || | |||||| ||||| || || ||| |||||| || | Sbjct 2302237 CCCAACGCTCCCAACAACCGATCTGCGACGAACTCGATGTACTGACTCATCAGCTCTCCG 2302178 Query 46504 TTCATTCCTATGAGTTTGACCGGTAGAGCCTCCGTAAGAAACTCTTGTTCAATAGTGACA 46563 ||||| || | | | | ||| ||||| || | |||||| || ||| || Sbjct 2302177 TTCATCCCAACCAATGCGCACGGCAGAGCATCACATACAAACTCCCTCTCTATATCCACT 2302118 Query 46564 GCATCCGATATTATCGATGTTAC----TGTTTCCTCA-CTT-----GGTGGATGCATCAA 46613 || ||| | || | | | || | || |||| ||| || ||| | | Sbjct 2302117 GCGTCCCTCACTAACCCTCTCACGCGCTCTTCGCTCAGCTTTGACCGGAGGAGGGA---- 2302062 Query 46614 ATGTTTAAACATTAAACATGCAAAATCACAATGAAGGCCTTCATCTCTACTAATTAATTC 46673 || ||| || || || ||||| ||||| || |||||||||| ||||| || Sbjct 2302061 --GT----ACAGCAAGCAAGCGAAATCGCAATGGAGACCTTCATCTCGTGAGATTAACTC 2302008 Query 46674 GTTAGAAAATGTGAGCCCAGGCATTAGTCCACGCTTTTTGAGCCAAAATATAGCCGCGAA 46733 ||| || || || | |||||||||| || |||||||| | |||||||||||| ||| Sbjct 2302007 GTTCGAGAAAGTTAATCCAGGCATTAACCCGCGCTTTTTTAACCAAAATATAGCGCAGAA 2301948 Query 46734 AGATCCAGAAAAGAATATGCCTTCTACAGCCGCGAATGCGACAAGTCTCTCTCCGTAACT 46793 | |||||| ||||| || ||||| || || || |||| || | || || || | Sbjct 2301947 ACTTCCAGAGAAGAAAATCCCTTCCACGCAAGCAAAAGCGATTAGCCGTTCGGCGAAAGT 2301888 Query 46794 GGCATCATTATGAATCCACCTTTGA--GCCCAATCAGCCTTTTTCTTTACACAAGGCATT 46851 | | | ||||| ||| | ||||| || || || || ||||| |||| | Sbjct 2301887 TTCCGAACCGTCGATCCA--TTTCAACGCCCACTCGGCTTTCTTAGCCACACACGGCACT 2301830 Query 46852 GTTTCTATAGCATTAAAGAGAAAGtttttttCATCACTATCTTTAACATATGTATCTATT 46911 ||||| | || | ||||| ||| ||||| | || || | || || || | Sbjct 2301829 GTTTCGACGGCGTGGAAGAGCCGGTTCTTTTCGTTGGAGTCCTTGATGTAAGTTTCAAGG 2301770 Query 46912 AAAAGACTATACATTTCTGAATGAATGTTTTCAATAGCCATCTGAAATCCGTAAAA 46967 | ||||||||||| || || || || ||||| || || || || || || || || Sbjct 2301769 AGGAGACTATACATCTCGGAGTGGATATTTTCGATGGCGATTTGGAAGCCATAGAA 2301714 >seq1 Length=37323695 Score = 123 bits (136), Expect = 4e-23 Identities = 149/203 (73%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 76754 CCTCCCTGATCTATATATCTGGCAGTGTTATTATAAACTCTCAACATTGGAATAATGCCG 76813 ||||| ||||| | ||| | ||||||| ||| | |||| || |||||| | |||||| Sbjct 6395079 CCTCCTTGATCAACATAACGAGCAGTGTCATTGAACACTCGCAGCATTGGGACAATGCCA 6395138 Query 76814 TTAGATGTACCATTTGTTCCAGAAATATAACTTCCACATGCACGAATATTACTAATAGAT 76873 ||||||||||||||||||||| ||||||||| || || |||||||| || ||| Sbjct 6395139 TTAGATGTACCATTTGTTCCACGAATATAACTCCCTGTGGCTCGAATATTTTGAACAGAG 6395198 Query 76874 AGGCCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAGCGTTTCAATGTGTCATAGATG 76933 | || || ||||| || ||| || | |||||| ||||| || ||||| || Sbjct 6395199 ACACCAATCCCTCCAGCTGATTTGCTAATAACAGCACACTCCTTCAAAGTATCATATATT 6395258 Query 76934 CCCTCTATACTATCATCCATCAT 76956 || || ||||||||||| |||| Sbjct 6395259 CCTTCAATACTATCATCTTTCAT 6395281 Score = 91.5 bits (100), Expect = 2e-13 Identities = 116/157 (74%), Gaps = 2/157 (1%) Strand=Plus/Plus Query 76492 CTCTCTTTCATATTGTGTATATAACCGTTCAAATTCATCTCCCCAAACATCATCCAAACC 76551 ||||| |||||| || ||||| | | |||||||| || |||||| ||| ||| || Sbjct 6394591 CTCTCGTTCATAATGAGTATACAGCTTCTCAAATTCTTCACCCCAACAATCTGCCAGGCC 6394650 Query 76552 AGGACATTCATTCGGACACATCAATGACCACTCACCATCTTCCTTA-ACCCGTTTCATAA 76610 || ||||| ||||| | |||||||||| |||| | | || || | || ||||| Sbjct 6394651 TGGTGCCTCATTAGGACAGAATAATGACCACTGCCCAT-TACTTTGGACTCTTTGCATAA 6394709 Query 76611 AGAGATCAGGTATCCATAGAGCAATAAATAGATCTCG 76647 |||||||||| | ||| |||||| ||||||||| || Sbjct 6394710 AGAGATCAGGCACCCAAAGAGCATAAAATAGATCACG 6394746 Score = 89.7 bits (98), Expect = 7e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 76994 GTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATTG 77053 ||||| ||||| || | ||| ||||| ||||||||||||||| ||| ||| | | | Sbjct 6395422 GTTCCAGCATTGAAAAGTGTTGGAGAAGCATGAGTGAACCATCTTTGAGACATCATGTGA 6395481 Query 77054 TATGTTTCAATAACTGCTTCTATATCCCATTGATGAATTCCTACAGCGACACGCATCAAC 77113 || |||| ||| | | || || || | ||||||||| ||||| || | ||| ||| Sbjct 6395482 TAAGTTTTTATAGCAGAATCAATGTCATCCTTATGAATTCCAACAGCAACCCTCATTAAC 6395541 Query 77114 ATATGCTGAGGTCGTTCTACAGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCAAA 77173 || || ||||| | ||||| | ||| | | |||||| | ||| || | || | Sbjct 6395542 ATGTGTTGAGGCCTTTCTATAACCTTCCCTTGAACTTTCAAGAGGTAGGACCTCTCAAGG 6395601 Query 77174 GTTTTAAAACCAAAATA 77190 |||||||| ||||| || Sbjct 6395602 GTTTTAAAGCCAAAGTA 6395618 Score = 87.8 bits (96), Expect = 3e-12 Identities = 96/129 (74%), Gaps = 14/129 (11%) Strand=Plus/Plus Query 76088 ATAAATGCATCTGCTAGTCCCTGAACTCCAATACCAATAGGTCTATGTCTCTTATTGGAA 76147 || |||| ||||| || |||||||||||||||||||| |||||||| | | || Sbjct 6393750 ATGAATGTGTCTGCAAGCCCCTGAACTCCAATACCAATTGGTCTATGAC-------GCAA 6393802 Query 76148 ATTTCAGCTTCTGG-------AATAGGGTAATAATTAATATCTATAATTTTATTGAGATT 76200 |||| | ||||||| || |||||| ||||||| ||| || ||||| || ||||| Sbjct 6393803 ATTTGATCTTCTGGCAGTTTCAACAGGGTAGTAATTAACATCAATTATTTTGTTAAGATT 6393862 Query 76201 TCTGACAAC 76209 ||| |||| Sbjct 6393863 TCTTGCAAC 6393871 >seq8 Length=19593398 Score = 98.7 bits (108), Expect = 1e-15 Identities = 161/232 (69%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 76744 TCGTTTATTACCTCCCTGATCTATATATCTGGCAGTGTTATTATAAACTCTCAACATTGG 76803 || |||| ||| || || || | ||| ||||| | |||| | |||| | ||| || Sbjct 16107899 TCTTTTACCACCCCCTTGGTCAACATAGTGAGCAGTATCATTAAATACTCGGAGCATGGG 16107840 Query 76804 AATAATGCCGTTAGATGTACCATTTGTTCCAGAAATATAACTTCCACATGCACGAATATT 76863 ||||||||| || || || |||||| | | ||| ||||||||| |||| | ||||| Sbjct 16107839 AATAATGCCATTGGAAGTCCCATTTTCTTCGCAAACATAACTTCCTGTTGCATGTATATT 16107780 Query 76864 ACTAATAGATAGGCCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAGCGTTTCAATGT 76923 | ||| || || || |||||||| || ||| || | |||||| || | || Sbjct 16107779 ATGAATGGAAAGACCAATTCCTCCAGCTGATTTGCTAATAACAGCACATTTCTTTAGAGT 16107720 Query 76924 GTCATAGATGCCCTCTATACTATCATCCATCATGTTAAGAAGAAAACAGCTA 76975 ||||| ||||| || ||| | |||||| |||| || || ||||||||| Sbjct 16107719 ATCATATATGCCGTCAATATTGTCATCCTTCATACAGAGTAGGAAACAGCTA 16107668 Score = 93.3 bits (102), Expect = 6e-14 Identities = 119/164 (73%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 76499 TCATATTGTGTATATAACCGTTCAAATTCATCTCCCCAAACATCATCCAAACCAGGACAT 76558 |||||||| ||||| || | || ||| || || |||||| |||| | | |||| || | Sbjct 16108495 TCATATTGGGTATACAATCTTTTAAACTCTTCGCCCCAACAATCAGCTAGACCATGAGCT 16108436 Query 76559 TCATTCGGACACATCAATGACCACTCACCATCTTCCTTAACCCGTTTCATAAAGAGATCA 76618 ||| ||||| | ||| ||||| | ||||| | | ||||| || ||| || || ||| Sbjct 16108435 TCAGAAGGACAGAACAAGGACCATTTTCCATCACCTTGAACCCTTTCCATGAAAAGGTCA 16108376 Query 76619 GGTATCCATAGAGCAATAAATAGATCTCGGGTTCTACGTTCTTC 76662 || | ||| ||||| |||||||||||| | | || |||||| Sbjct 16108375 GGAACCCAAAGAGCCTAAAATAGATCTCGAGCCCGACATTCTTC 16108332 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712930559065920