Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Theobroma_20cacao_20[refseq_20GCF_5F000208745.1_202016-07-09] 431 sequences; 324,879,930 total letters Query= NC_031235.1 Length=194437 Score E Sequences producing significant alignments: (Bits) Value seq431 708 0.0 seq9 86.0 8e-12 >seq431 Length=160619 Score = 708 bits (784), Expect = 0.0 Identities = 754/990 (76%), Gaps = 4/990 (0%) Strand=Plus/Minus Query 183195 CTTCTGCGAATGGATTACCAGCACTAACAACCGCCTCTATGTGGGTTGGTTTGGCACACT 183254 |||||| | ||||| ||||||||| | ||||| || || | || |||||||| | Sbjct 1565 CTTCTGTAACTGGATAACCAGCACTGAAAACCGTCTTTACATCGGATGGTTTGGTGTTTT 1506 Query 183255 GATGATTCCAACTCTGTTGGCAGCAACCATCTGC-TTCATCGTTGCCTTCGTCGCTGCTC 183313 |||||| || || | ||| | ||||| |||| || || |||||||| | ||||||| Sbjct 1505 GATGATCCCTACCTTATTGACCGCAACT-TCTGTATTTATTATTGCCTTCATTGCTGCTC 1447 Query 183314 CTCCTGTGGACATCGACGGCATCCGCGAACCCGTTGCTGGGTCGCTCATGTATGGAAACA 183373 |||| || || || || || || || ||||| ||| |||| || || | || ||||||| Sbjct 1446 CTCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTACTTTACGGAAACA 1387 Query 183374 ACATCATCTCTGGTGCAGTTGTTCCTTCTTCCAACGCAATTGGACTTCACTTCTATCCCA 183433 | || || |||||||| || ||||| |||| || || || | ||||| || || | Sbjct 1386 ATATTATTTCTGGTGCCATTATTCCTACTTCTGCAGCTATAGGTTTGCACTTTTACCCGA 1327 Query 183434 TCTGGGAAGCAGCATCACTCGATGAGTGGCTGTATAACGGTGGTCCTTACCAACTCGTAG 183493 |||||||||| ||||| | ||||| ||| | || || || |||||||| | || | | Sbjct 1326 TCTGGGAAGCGGCATCTGTTGATGAATGGTTATACAATGGCGGTCCTTATGAGCTAATTG 1267 Query 183494 TCTTCCACTTCCTCATTGGCGTCTTCTGCTACATGGGTCGTGAGTGGGAATTGTCTTACC 183553 | | |||||| | |||| || || ||||||||||||||||||||| | || || Sbjct 1266 TTCTACACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAACTTAGTTTCC 1207 Query 183554 GTCTCGGTATGCGTCCTTGGATCTGTGTTGCTTATAGCGCACCTGTTGCTGCTGCAACCG 183613 |||| |||||||| ||||||||| |||||| ||| || |||||||| ||||| ||| Sbjct 1206 GTCTGGGTATGCGCCCTTGGATCGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTGCCG 1147 Query 183614 CTGTCTTCCTGGTCTATCCTTTCGGTCAAGGTTCTTTTAGTGATGGTATGCCCCTGGGTA 183673 |||| ||| || ||||||| |||||||||| |||| |||||||||||| || || | Sbjct 1146 CTGTTTTCTTGATCTATCCAATCGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAA 1087 Query 183674 TCAGTGGCACCTTTAACTATATGCTTGTCTTCCAAGCAGAGCACAACATCCTGATGCACC 183733 || ||| || || |||| ||| |||| ||||| || || ||||||||||| ||||||| Sbjct 1086 TCTCTGGTACTTTCAACTTCATGATTGTATTCCAGGCTGAACACAACATCCTTATGCACC 1027 Query 183734 CCTTCCACATGCTGGGTGTCGCTGGTGTCTTCGGTGGTTCTCTGTTCAGTGCAATGCACG 183793 | || |||||| | || || |||||||| ||||| || || || |||||||| ||||| | Sbjct 1026 CATTTCACATGTTAGGCGTAGCTGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATG 967 Query 183794 GTTCTCTGGTTACTTCCTCGCTGGTTC-GTGAAACCACTGAGTCTGAGTCACAGAACTAT 183852 |||| |||| || || | | | | || | |||||||| || ||| || || | Sbjct 966 GTTCCTTGGTAACCTC-TAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAA 908 Query 183853 GGTTACAAGTTCGGTCAAGAAGAAGAGACCTACAACATTGTCGCTGCTCATGGATACTTT 183912 ||||||| ||||||||||| ||||| || || || || || ||||||||||| || ||| Sbjct 907 GGTTACAGATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGCTGCTCATGGTTATTTT 848 Query 183913 GGTCGTCTGATCTTCCAGTATGCTTCGTTTAACAATTCTCGTTCTCTTCACTTCTTCCTT 183972 || || |||||||||| |||||| || ||||||||||||||| | ||||||||||| Sbjct 847 GGCCGATTGATCTTCCAATATGCTAGTTTCAACAATTCTCGTTCTTTACACTTCTTCCTA 788 Query 183973 GCTGCTTGGCCAGTGGTCGGCATCTGGTTTACTGCTCTTGGTGTTAGCACTATGGCATTT 184032 ||||||||||| || || || |||||||| || ||| | ||| ||||||||||||| || Sbjct 787 GCTGCTTGGCCTGTAGTGGGTATCTGGTTCACCGCTTTAGGTATTAGCACTATGGCTTTC 728 Query 184033 AACCTGAATGGTTTTAACTTCAACCAGTCCATCATTGATGGTCAAGGTCGTGTCCTGAAC 184092 ||||| |||||||| || |||||||| || | ||||| ||||||||||||| | || Sbjct 727 AACCTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGTGTAATTAAT 668 Query 184093 ACCTGGGCAGACGTTCTCAACCGTGCTGGTCTTGGCATGGAAGTGATGCACGAGCGTAAT 184152 |||||||| || || | ||||||||| ||||| |||||||| ||||| || |||||| Sbjct 667 ACCTGGGCTGATATTATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAAT 608 Query 184153 GCTCACAACTTCCCTCTCGACCTTGCTGCT 184182 ||||| ||||||||||| ||||| |||||| Sbjct 607 GCTCATAACTTCCCTCTAGACCTAGCTGCT 578 Score = 500 bits (554), Expect = 1e-136 Identities = 717/1005 (71%), Gaps = 4/1005 (0%) Strand=Plus/Plus Query 185971 TGGATGACTGGCTTAAACGCGACCGCTTTGTCTTTGTGGGCTGGTCTGGATTACTTCTTT 186030 ||||||||||| | | ||||| || || ||||| || ||||| || || | || | Sbjct 34763 TGGATGACTGGTTACGTAGGGACCGTTTCGTTTTTGTAGGTTGGTCCGGCCTATTGCTCT 34822 Query 186031 TTCCCACTGCTTATATGGCAATTGGTGGCTGGCTTACTGGCACAACGTTTGTTACGAGCT 186090 |||| ||| ||| | || | || || ||| |||| || ||||| ||||| || | Sbjct 34823 TTCCTTGTGCCTATTTCGCTTTAGGGGGTTGGTTTACAGGTACAACCTTTGTAACTTCAT 34882 Query 186091 GGTATACCCACGGGTTGGCGTCTTCTTACCTTG-AGGGTGCTAATTTTCTCACGGCAGCA 186149 ||||||| || || ||||| ||| || | | ||| ||| ||||| | || || ||| Sbjct 34883 GGTATACTCATGGATTGGCCAGTTCCTATTTGGAAGGCTGC-AATTTCTTAACCGCCGCA 34941 Query 186150 GTGTCAACTCCTGCTGACGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTCT 186209 || || ||||||||| | | | | |||||| | | |||| ||||||||||| | Sbjct 34942 GTTTCTACTCCTGCTAATAGTTTAGCACATTCTTTGTTGTTACTATGGGGTCCTGAAGCA 35001 Query 186210 CAAGGAGATATCATCCGCTGGTTCCAACTTGGGGGACTCTGGAATTTTGTGGCGCTCCAC 186269 ||||||||| | | || |||| ||| | || || || |||| ||||| || |||||| Sbjct 35002 CAAGGAGATTTTACTCGTTGGTGTCAATTAGGCGGTCTGTGGACATTTGTTGCTCTCCAC 35061 Query 186270 GGAGCCTTTGCTCTCATAGGTTTCATGCTGCGACAGTTTGAAATCAGTCG-TCTCGTAGG 186328 || || || | || |||||||| ||| | || || |||||| | || ||| || Sbjct 35062 GGCGCTTTCGGACTAATAGGTTTTATGTTACGTCAATTTGAACTTGCGCGATCT-GTTCA 35120 Query 186329 TATCCGTCCATACAATGCCATTGCTTTTTCTGGTCCTATCGCTGTCTTTGTTAGTGTATT 186388 | || || || ||||| || || || |||||||| || ||||| |||||| |||||| Sbjct 35121 ATTGCGACCTTATAATGCAATCGCATTCTCTGGTCCAATTGCTGTTTTTGTTTCTGTATT 35180 Query 186389 CCTCATCTACCCTCTTGGACAGTCCTCATGGTTCTTCGCTCCCTCCTTTGGAGTCGCAGC 186448 ||| || || || || || || || |||||||| || ||| ||||| || ||||| Sbjct 35181 CCTGATTTATCCACTAGGTCAATCTGGTTGGTTCTTTGCGCCCAGTTTTGGTGTAGCAGC 35240 Query 186449 AATCTTTAGATTCCTGTTGTTCCTCCAAGGATTCCACAACTGGACGTTGAATCCATTCCA 186508 || ||| ||||| | | || |||||||||| || || ||||| ||||| ||||| || Sbjct 35241 TATATTTCGATTCATCCTCTTTTTCCAAGGATTTCATAATTGGACATTGAACCCATTTCA 35300 Query 186509 CATGATGGGTGTAGCAGGTATCCTTGGTGGTGCTCTGCTGTCAGCAATCCATGGTGTTAC 186568 |||||||| || || ||| | | || | ||||||||| | || || ||||||| ||| Sbjct 35301 TATGATGGGAGTTGCCGGTGTATTGGGCGCTGCTCTGCTATGCGCTATTCATGGTGCTAC 35360 Query 186569 TGTAGAAAATACTCTTTATGAAGATGGCGAACAAGCAAACACATTCAAAGCATTCGATAC 186628 || ||||||||| | | ||||||||| || ||||| |||||| || || | | Sbjct 35361 CGTGGAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACATTCCGTGCTTTTAACCC 35420 Query 186629 GACGCAAGAAGAAGAAACCTATTCGATGGTCACTGCGAACAGATTCTGGTCACAGATCTT 186688 || |||| |||||||| ||||| |||||||| || ||| | || ||||| || ||||| Sbjct 35421 AACTCAAGCCGAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTGGTCCCAAATCTT 35480 Query 186689 CGGAATTGCGTTTAGCAATAAGCGTTGGCTTCATTTCTTCATGCTCTTTGTTCCTGTTAT 186748 || |||| ||| |||||| |||||| | |||||||| ||| | ||||| || || | Sbjct 35481 TGGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTGTACCAGTAAC 35540 Query 186749 GGGTCTTTGGACCTCTTCCATTGGCATTATTGGTCTTGCTCTTAACCTTCGTGCTTATGA 186808 ||| | |||| | | |||| | | ||||| ||||| ||||| ||||| ||||| Sbjct 35541 CGGTTTATGGATGAGTGCTCTTGGAGTAGTCGGTCTGGCTCTGAACCTACGTGCCTATGA 35600 Query 186809 CTTTGTAAGTCAGGAGGTGAGAGCAGCAGAGGATCCTGAGTTCGAGACGTTCTATACCAA 186868 ||| || ||||| | | ||||| || |||||||| || ||||| ||||| ||||| Sbjct 35601 CTTCGTTTCCCAGGAAATCCGTGCAGCGGAAGATCCTGAATTTGAGACTTTCTACACCAA 35660 Query 186869 GAATATCCTATTGAATGAAGGTCTACGTGCCTGGATGGCACCAGTGGATCAACCACATGA 186928 ||||| || || || || ||| | ||||| |||||||| | ||||| || ||||| Sbjct 35661 AAATATTCTTTTAAACGAGGGTATTCGTGCTTGGATGGCGGCTCAAGATCAGCCTCATGA 35720 Query 186929 AAACTTTGTATTTCCTGAAGAAGTGTTGCCAAGAGGCAACGCTCT 186973 |||| || |||| ||||| || || | || | || |||||||| Sbjct 35721 AAACCTTATATTCCCTGAGGAGGTTCTACCCCGTGGAAACGCTCT 35765 >seq9 Length=38630433 Score = 86.0 bits (94), Expect = 8e-12 Identities = 133/190 (70%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 170989 CTGAAGATCAATATATTCTTGATGCTGCTGAAGAAGCAGGATTTGATTTGAACTATTCGT 171048 |||| ||| |||| || | ||||||||||| || || || |||| || |||||| | Sbjct 34088367 CTGATGATAAATACATCTTAGATGCTGCTGAGGAGGCGGGTGTTGACCTGCCCTATTCTT 34088308 Query 171049 GTCGTGCTGGTGCTTGTTCGACCTGTGCTGGGAAAATTGAGAGTGGTTCTGTTGATCAAT 171108 | | ||||| ||||| || || ||||||||||| ||| || || || ||||||| Sbjct 34088307 GCAGGGCTGGAGCTTGCTCCACATGTGCTGGGAAGATTATTTCAGGCTCAGTGGATCAAT 34088248 Query 171109 CCGATCAATCTTTCCTTGATGATGATCAGATTGAATCAGGTTTCATTCTGACCTGCGTCT 171168 | || || |||||||||||| | || || || || | | ||||| || || | Sbjct 34088247 CTGACGGTTCCTTCCTTGATGATAAACAAATGGAGGAGGGATATGTGCTGACTTGTGTTT 34088188 Query 171169 CATATCCTAC 171178 |||| || || Sbjct 34088187 CATACCCAAC 34088178 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622067048595720