Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thlaspi_20arvense_20[genbank_20GCA_5F000956625.1_202015-03-19] 6,768 sequences; 343,012,389 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq146 145 8e-30 seq69 122 9e-23 >seq146 Length=264749 Score = 145 bits (160), Expect = 8e-30 Identities = 558/860 (65%), Gaps = 30/860 (3%) Strand=Plus/Plus Query 16694 TTTTCGAAAAAGTTAGTTTTGCCCTCTAGAGATATATTCTCCATGAAATCAAAAGGATTA 16753 || ||||| ||||||||||| |||| || || || ||||| ||||||| |||||| Sbjct 120720 TTCTCGAAGAAGTTAGTTTTCCCCTGAAGCGAAATCAATTCCATCCAATCAAACGGATTA 120779 Query 16754 GTAGCTGAAAATATTTTAGAGTACCCCAGTTCGGCGATTAATCTATCCGCTACAAATTCT 16813 || | | | ||| |||||| || | | | ||| | |||||| || ||||| Sbjct 120780 GTCACACCGTACACCTTACCGTACCCAAGCGCACCCAGTAACCGATCCGCCACGAATTCG 120839 Query 16814 ATATATTGGCACATTAATTCGCAGTTCATTCCTATAAGACGTACC-GGAAGAGCTTCCGT 16872 || || || | ||| || || | |||||| || | | ||| | ||||| || || Sbjct 120840 ATGTACTGACTCATCAAATCACGGTTCATCCCAACCA-ACGCGCAAGGAAGCGCGTCGCA 120898 Query 16873 CAAAAATCGTTGCTCTATAACAACCGCTTCCTTAATAATACTAGCAACTCGTTCCTCGGA 16932 || ||| | ||| || | ||||| || || || ||||| || ||| Sbjct 120899 CACAAACTCTCTCTCGATCTCGACCGCATCACGAACGATCGATTTCACTCGATCTTCGCT 120958 Query 16933 CGGTGTATGTTTAAGATGTTTAAACATCAGACATGCGAAATCGCAATGTAATCCCTCGTC 16992 | | | ||| | | | |||| ||| ||||||||||| || | || ||||| Sbjct 120959 GAGCTTCGATCGAAGGAGACTGTAGATCAAACAAGCGAAATCGCAGTGAAGGCCTTCGTC 121018 Query 16993 TCTGCTGATAAGTTCGTTAGAAAATGTCAACCCGGGCATCTTTCCTCGTTTCTTTAACCA 17052 || ||| | |||||| || || || | ||| ||||| ||||||||||| | ||| Sbjct 121019 TCGCGAGATCAATTCGTTGGAGAAAGTGAGCCCAGGCATTAAACCTCGTTTCTTCAGCCA 121078 Query 17053 AAATATCGCGGCGAACGACCCAGAAAAGAATATACCCTCGACGGATGCAAACGCGATTAA 17112 || |||| | ||| || || ||||| ||||| |||||| | || || || | | Sbjct 121079 GAAAATCGAGCAGAAGCTACCGGAGAAGAAGATACCTTCGACGCAAGCGAAAGCCACGAT 121138 Query 17113 TCGTTCGGCGTACGTCGCGTCTTTGTTACG--AATCCATTTCTGCACCCACTCG-GCTTT 17169 ||||| ||| | || ||| | | || ||||||||| | |||| ||| || | Sbjct 121139 ACGTTCAGCGAA----GC-TCTGAGATCCGTCGATCCATTTCATCGCCCA-TCGCGCCAT 121192 Query 17170 TTGCTTTATGCAATCCATCGTTTCTATGGC-CTTAA---ATAATTTCTCTTTTTCCTGTA 17225 || | | ||| || ||||| || || | || || || ||||| || ||| Sbjct 121193 TTTCGCGACGCAGGGAATGGTTTCGATTGCGCGGAAGAGATGATCTCTCTCTT---TGT- 121248 Query 17226 GGTCGATTATATACGTATCGATGAGTAGGCTGTACATTTCGGAGTGTATGTTCTCCATGG 17285 ||| | || || ||||||| || || |||||||| |||||||| || ||||| || | Sbjct 121249 TGTCTTTGATGTAGGTATCGAGAAGGAGACTGTACATCTCGGAGTGAATATTCTCGATCG 121308 Query 17286 CTATCTGAAATCCGTAAAAGCATCGGGCTTCCGCTATTTGAACTTC-CACGTAGAATCGT 17344 | ||||| |||||||| ||| || || || | | |||||| || || | ||| || Sbjct 121309 CGATCTGGAATCCGTAGAAGGCACGAGCCTCGGAGACTTGAACATCGGACAT-GAACCGG 121367 Query 17345 TCCGCTAGATTTTCGTTCACGATGCCGTCGCTCGCGGCGAAAAACGCCAATATATGCTTA 17404 | |||||| || ||||| ||||| |||||||| || || | | ||||| Sbjct 121368 GAAGATAGATTCTCCAGAACGATTCCGTCAGATGCGGCGAAGAAAGCGAGGACGTGCTTG 121427 Query 17405 ATGAAATATTTTTCGTC-CGGTGTAAGAACGC-----GCCAGTCCTTTAAATCTTTGGAT 17458 | ||| | |||||| || || | || |||||| |||| | ||| Sbjct 121428 ACGAAGTGCCGTTCGTCGTCGTTTAGG---GCTTTTTCCCAGTCGCGGTAATCCTGAGAT 121484 Query 17459 ATATCCACTTCTTCGGGGGTCCAAAAACTAGCCACTGCCTTTTTATACATATTCCAAATA 17518 | ||| |||||||||| |||||| ||| ||| | || || || ||||| | ||| || Sbjct 121485 AGATCGACTTCTTCGGCGGTCCAGAAAGAAGCTTCGGCTTTCTTGTACATCTCCCAGATC 121544 Query 17519 TCATTGTATTGTATGGGGAA 17538 | |||||| || ||||| Sbjct 121545 TGTGGGTATTGGATCGGGAA 121564 >seq69 Length=847923 Score = 122 bits (134), Expect = 9e-23 Identities = 304/454 (67%), Gaps = 7/454 (2%) Strand=Plus/Minus Query 16958 ATCAGACATGCGAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAAAT 17017 || || || ||||||||||| || || || ||||||| ||| | ||||| || || Sbjct 357036 ATGAGGCACGCGAAATCGCAGTGCAAGCCTTCGTCTCGAGAGATCAACTCGTTGGAGAAG 356977 Query 17018 GTCAACCCGGGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAGAA 17077 || | || ||||| || |||||||| | ||| || |||| | ||| || || Sbjct 356976 GTTAGTCCCGGCATGAGCCCGCGTTTCTTCAGCCAGAAAATCGAGCAGAAGCTACCGGAG 356917 Query 17078 AAGAATATACCCTCGACGGATGCAAACGCGATTAATCGTTCGGCGTACGTCGCGTCTTTG 17137 ||||| || || |||||| | || || |||| | || || ||| | ||| | | | Sbjct 356916 AAGAAGATGCCTTCGACGCAGGCGAAGGCGACGATACGCTCCGCGAAAGTCTGGGATCCG 356857 Query 17138 TTACGAATCCATTTCTGCACCCACTCGGCTTTTTGCTTTATGCAATCCATCGTTTCTATG 17197 | || ||||| || | |||||| || || | | | |||| || ||||| || Sbjct 356856 T--CG-ATCCACGTCATCGCCCACTGCGCCTTCTTCGCGACGCAAGGGATGGTTTCGATT 356800 Query 17198 GCCTTAAATAATTTCTCTTTTTCCTGTAGGTCGATTATATACGTATCGATGAGTAGGCTG 17257 || ||| | | ||| | |||| ||| | || || || |||| ||| || ||| Sbjct 356799 GCGCGAAACAGATGGTCTCTCTCCTTGTTGTCCTTGATGTAAGTGTCGAGGAGGAGACTG 356740 Query 17258 TACATTTCGGAGTGTATGTTCTCCATGGCTATCTGAAATCCGTA-AAAGCATCGGGCTTC 17316 ||||| ||||| || |||||||| || || ||||| || ||||| |||||| || || || Sbjct 356739 TACATCTCGGAATGGATGTTCTCGATCGCGATCTGGAACCCGTAGAAAGCA-CGCGCCTC 356681 Query 17317 CGCTATTTGAACTTC-CACGTAGAATCGTTCCGCTAGATTTTCGTTCACGATGCCGTCGC 17375 || | |||||| || || | |||||| || ||||| || ||||| ||||| Sbjct 356680 CGAGACTTGAACATCGGACAT-GAATCGAGAAGCGAGATTCTCCAGAACGATTCCGTCTG 356622 Query 17376 TCGCGGCGAAAAACGCCAATATATGCTTAATGAA 17409 |||||||| || || | | || || ||||| Sbjct 356621 AGGCGGCGAAGAAGGCGAGGACGTGTTTGATGAA 356588 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517501815642240