Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thlaspi_20arvense_20[genbank_20GCA_5F000956625.1_202015-03-19] 6,768 sequences; 343,012,389 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq146 104 2e-17 >seq146 Length=264749 Score = 104 bits (114), Expect = 2e-17 Identities = 244/361 (68%), Gaps = 17/361 (5%) Strand=Plus/Plus Query 16201 ACACGCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAA 16260 ||| ||||| ||||| || || |||||||||| ||| | ||||||||| ||||| | Sbjct 120989 ACAAGCGAAATCGCAGTGAAGGCCTTCGTCTCGCGAGATCAATTCGTTGGAGAAAGTGAG 121048 Query 16261 CCCTGGCATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCA-AATGACCCCGAAAAGA 16319 ||| |||||| ||||||||||| | |||||| |||| |||| || || || |||| Sbjct 121049 CCCAGGCATTAAACCTCGTTTCTTCAGCCAGAAAATCG-AGCAGAAGCTACCGGAGAAGA 121107 Query 16320 ATATACCCTCAACAGATGCAAAAGCGATTAATCGTTCCGCGTACGTAGCATCTTTATTAC 16379 | ||||| || || | || ||||| | | ||||| | || ||| ||| | | Sbjct 121108 AGATACCTTCGACGCAAGCGAAAGCCACGATACGTTCAG----CGAAGC-TCTGAGATCC 121162 Query 16380 G--AATCCATTTCTGTACCCATTCGGCTTTTTGTTTTATACAATCCATCGTTTCTATGGC 16437 | ||||||||| ||||| || ||| | || || ||||| || || Sbjct 121163 GTCGATCCATTTCATCGCCCATCGCGCCATTTTCGCGACGCAGGGAATGGTTTCGATTGC 121222 Query 16438 -CTTAA---ACAATTTCTCTTTTTCCTGAATATCGATTATATACGTATCAATCAGTAAAC 16493 | || | || ||||| ||| || || | || || ||||| | || | || Sbjct 121223 GCGGAAGAGATGATCTCTCTCTTTGTTG----TCTTTGATGTAGGTATCGAGAAGGAGAC 121278 Query 16494 TGTACATTTCTGAGTGTATGTTCTCTATGGCTATCTGAAATCCATAGAAGCATCGAGCCT 16553 ||||||| || ||||| || ||||| || || ||||| ||||| |||||| ||||||| Sbjct 121279 TGTACATCTCGGAGTGAATATTCTCGATCGCGATCTGGAATCCGTAGAAGGCACGAGCCT 121338 Query 16554 C 16554 | Sbjct 121339 C 121339 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511371134341760