Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thlaspi_20arvense_20[genbank_20GCA_5F000956625.1_202015-03-19] 6,768 sequences; 343,012,389 total letters Query= NC_001348.1 Length=124884 Score E Sequences producing significant alignments: (Bits) Value seq45 113 4e-20 >seq45 Length=496881 Score = 113 bits (124), Expect = 4e-20 Identities = 175/249 (70%), Gaps = 2/249 (1%) Strand=Plus/Plus Query 18865 TACAG--CAAGGAATCGATCAGCTGCAAACTGTTATAGATACAATTAAAACAAACCCAGA 18922 ||||| |||||| | ||||||||| | ||| || | | || || | || || || Sbjct 239034 TACAGGCCAAGGATTTGATCAGCTGTTAGATGTAATTAACAAGATCAAGAACAATCCTGA 239093 Query 18923 AAGCCGACGAATGATTATATCGTCTTGGAATCCAAAGGATATCCCCTTAATGGTACTACC 18982 ||||| || || || ||| |||||||||| ||| | | |||| ||| || Sbjct 239094 TGATCGACGGATTATAATGTCGGCTTGGAATCCTCCTGATCTTAAGCTGATGGCACTTCC 239153 Query 18983 TCCATGTCACACGTTATGTCAGTTTTACGTTGCAAACGGTGAATTATCCTGCCAAGTATA 19042 |||||| |||| ||| ||||| || |||||||| || || | || || ||| | || Sbjct 239154 TCCATGCCACATGTTTGCACAGTTCTATGTTGCAAATGGCGAGCTTTCATGTCAAATGTA 239213 Query 19043 CCAGAGATCGGGGGATATGGGCCTTGGGGTACCGTTCAACATTGCTGGATATGCACTTCT 19102 ||| | || | |||||||| ||||| ||||||||||||||||| |||| | ||||| Sbjct 239214 TCAGCGGTCAGCTGATATGGGTCTTGGTGTACCGTTCAACATTGCCTCATATTCCCTTCT 239273 Query 19103 TACCTACAT 19111 ||| | ||| Sbjct 239274 TACATGCAT 239282 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 399471046912560