Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thlaspi_20arvense_20[genbank_20GCA_5F000956625.1_202015-03-19] 6,768 sequences; 343,012,389 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq146 127 2e-24 seq2 116 4e-21 >seq146 Length=264749 Score = 127 bits (140), Expect = 2e-24 Identities = 403/611 (66%), Gaps = 19/611 (3%) Strand=Plus/Plus Query 24129 ATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAAC 24188 |||||||| |||||||||||||| || || ||||||| || ||||||||||| || Sbjct 120984 ATCAAACAAGCGAAATCGCAGTGAAGGCCTTCGTCTCGCGAGATCAATTCGTTGGAGAAA 121043 Query 24189 GTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGAT-CCAGA 24247 ||||| || ||||||| || || || || ||||| || || || ||| | | | || || Sbjct 121044 GTGAGCCCAGGCATTAAACCTCGTTTCTTCAGCCAGAAAATCGA-GCAGAAGCTACCGGA 121102 Query 24248 AAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATAACCGGCGCTGTC 24307 ||||| || ||||| || || || || | | | ||| | | || ||| Sbjct 121103 GAAGAAGATACCTTCGACGCAAGCGAAAGCCACGATACGTTCAGCGAA----GCTCTGAG 121158 Query 24308 AT--GT--ATCCACTTTTGAGCCCAATCG-GCCTTCTTTTTTACACAAGGCATTGTCTCT 24362 || || ||||| || |||| |||| ||| | || || || || || || || Sbjct 121159 ATCCGTCGATCCATTTCATCGCCC-ATCGCGCCATTTTCGCGACGCAGGGAATGGTTTCG 121217 Query 24363 ATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGA 24422 || || ||||||| | | | || || | ||||| | || ||||| | | ||| Sbjct 121218 ATTGCGCGGAAGAGATGATCTCTCTCTTTGTTGTCTTTGATGTAGGTATCGAGAAGGAGA 121277 Query 24423 CTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCC 24482 || ||||| || || ||||| || || || || || || ||||||||||| | |||| Sbjct 121278 CTGTACATCTCGGAGTGAATATTCTCGATCGCGATCTGGAATCCGTAGAAGGCACGAGCC 121337 Query 24483 TCGGTAATCTGTACTTCTATACA-AAATCGTTCTGCTAAATTTTCATTCACTATTCCGTC 24541 |||| | || || || ||| || || | || ||| || || |||||||| Sbjct 121338 TCGGAGACTTGAACATC-GGACATGAACCGGGAAGATAGATTCTCCAGAACGATTCCGTC 121396 Query 24542 ACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTC-TGGTGTTAG-- 24598 | || || || || || | || || || | || | |||||| | || |||| Sbjct 121397 AGATGCGGCGAAGAAAGCGAGGACGTGCTTGACGAAGTGCCGTTCGTCGTCGT-TTAGGG 121455 Query 24599 -TTTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATG 24657 ||| | ||| || | ||| | ||||| ||| |||||||| | ||||| || || | Sbjct 121456 CTTTTTCCCAGTCGCGGTAATCCTGAGATAGATCGACTTCTTCGGCGGTCCAGAAAGAAG 121515 Query 24658 CCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATAACAAATC 24717 | || || || || ||||| | |||||| | | ||||| || || || ||| |||| Sbjct 121516 CTTCGGCTTTCTTGTACATCTCCCAGATCTGTGGGTATTGGATCGGGAACATACAGAATC 121575 Query 24718 TATTTGGATTT 24728 || |||| || Sbjct 121576 GATCTGGACTT 121586 >seq2 Length=2373158 Score = 116 bits (128), Expect = 4e-21 Identities = 148/204 (73%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 54184 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 54243 |||||| ||||| | || | ||| || | ||| | || | ||||||||||| |||||| Sbjct 1333101 TCCTCCTTGATCAACATAGCGAGCAGTATCATTGAATACCCGCAACATTGGAACAATACC 1333160 Query 54244 ATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGA 54303 ||| ||||| ||||| || || || || |||||| | ||||| || || |||||| Sbjct 1333161 ATTAGATGCTCCATTTGTGCCACGAATGTAACTTCCAGTTGCACGGATGTTGTGAATTGA 1333220 Query 54304 TAGACCTATCCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGAT 54363 | || || ||||| ||| ||| ||| | || ||| ||| || |||||||| || Sbjct 1333221 AACGCCAATACCCCCAGCCGATTTGCTGATAACAGCACATTCTTTCAATGTATCATATAT 1333280 Query 54364 GCCCTCTATACTATCATCCATCAT 54387 ||||| || ||||||||| |||| Sbjct 1333281 TCCCTCGATGCTATCATCCTTCAT 1333304 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593671371152640