Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thlaspi_20arvense_20[genbank_20GCA_5F000956625.1_202015-03-19] 6,768 sequences; 343,012,389 total letters Query= NC_001875.2 Length=131995 Score E Sequences producing significant alignments: (Bits) Value seq252 113 4e-20 seq65 113 4e-20 seq49 111 1e-19 seq442 104 2e-17 seq187 95.1 1e-14 seq70 89.7 4e-13 seq5102 86.0 5e-12 >seq252 Length=291119 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || || ||||||||||||| ||| | ||| |||||||| || || || || || ||| Sbjct 179545 CCTCCACGAAGCCTGAGCACCAGATGAAGAGTCGACTCCTTCTGGATATTGTAATCAGCC 179604 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 | ||| | ||||||| ||||| || || || | || | |||||||| ||| || Sbjct 179605 AATGTTCTGCCGTCCTCAAGCTGCTTTCCGGCGAAGATCAACCTCTGCTGATCCGGAGGG 179664 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | |||||||||||| |||||| || || | | | | || || | ||| Sbjct 179665 ATGCCTTCCTTGTCCTGGATCTTGGCCTTAACGTTGTCAATTGTGTCCGAGCTCTCAACC 179724 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 |||| ||| ||||||||||| || |||||||| || || || ||||| Sbjct 179725 TCCAAGGTGATGGTCTTGCCCGTCAACGTTTTAACGAAAATCTGCAT 179771 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || || || | ||| |||| || | ||| ||||||||||| ||||| ||||| ||| Sbjct 178633 CCACCACGAAGACGGAGAACCAAGTGAAGAGTCGACTCCTTTTGGATGTTGTAGTCAGCC 178692 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 | || | | ||||| |||||||| || || | || || | |||||||||| || Sbjct 178693 AATGTGCGACCATCCTCAAGCTGTTTCCCAGCGAAGATGAGACGCTGCTGGTCCGGAGGG 178752 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | ||||||||||| |||||| ||||| | | | | || || | ||| Sbjct 178753 ATCCCTTCCTTGTCTTGGATCTTCGCCTTCACGTTGTCAATGGTGTCCGAGCTCTCAACC 178812 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 |||| || |||||||| |||||||| || || ||||| || ||||| Sbjct 178813 TCCAGTGTGATGGTCTTACCGGTTAAGGTCTTCACAAAAATCTGCAT 178859 Score = 100 bits (110), Expect = 2e-16 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 20966 CACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTC 21025 ||||| || | || |||||||| |||||||| ||||| |||| ||| | ||||||| Sbjct 179334 CACCAAGTGAAGTGTAGACTCCTTCTGAATGTTGTAGTCGGCCAATGTTCTGCCGTCCTC 179393 Query 21026 CAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGC 21085 ||||| || || || | || | || ||||| ||| || | |||||||||||| Sbjct 179394 AAGCTGCTTTCCGGCGAAGATCAACCTTTGCTGATCCGGAGGAATGCCTTCCTTGTCTTG 179453 Query 21086 GATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTT 21145 ||||||| ||||| | | | | || || | |||| |||| || || ||||| Sbjct 179454 GATCTTTGCCTTCACGTTGTCAATCGTGTCCGAGCTCTCCACCTCCAATGTGATCGTCTT 179513 Query 21146 GCCGGTTAACGTTTTGACAAATATTTGCAT 21175 |||||| || ||||| || || || ||||| Sbjct 179514 GCCGGTCAAGGTTTTAACGAAAATCTGCAT 179543 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || ||||| | | ||||| || | ||| |||||||| |||||||| || || ||| Sbjct 178861 CCACCACGCAGACGCAACACCAAGTGAAGAGTCGACTCCTTCTGAATGTTGTAATCGGCC 178920 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 | || | | ||||| ||||| || || || | || || | |||||||||| || Sbjct 178921 AATGTGCGACCATCCTCGAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGGTCCGGAGGG 178980 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | |||||||||||| |||||| ||| || | | | || || | ||| | Sbjct 178981 ATGCCTTCCTTGTCCTGGATCTTAGCTTTGACGTTATCAATGGTGTCGGAGCTCTCGACT 179040 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 || | ||| || |||||||||||||| || || || || || ||||| Sbjct 179041 TCAAGGGTGATCGTCTTGCCGGTTAAAGTCTTCACGAAAATCTGCAT 179087 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || || ||||||||||| | ||| | ||| |||||||| || ||||| ||||| || Sbjct 179773 CCACCACGAAGCCTGAGCACTAGATGAAGAGTCGACTCCTTCTGGATGTTGTAGTCAGCA 179832 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 || ||| | ||||||| || || || || || | || || || |||||||| || Sbjct 179833 AGAGTTCGTCCGTCCTCGAGTTGCTTCCCGGCGAAGATCAGCCTTTGCTGGTCTGGTGGG 179892 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | || |||||||| ||| || || || | | ||| || ||| |||| Sbjct 179893 ATCCCCTCCTTGTCTTGGATTTTAGCCTTGACGTTGTCGATGGTGTCAGAACTCTCCACC 179952 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 || | ||| || ||||| || |||| |||||||| || || ||||| Sbjct 179953 TCGAGGGTGATCGTCTTTCCCGTTAGGGTTTTGACGAAGATCTGCAT 179999 >seq65 Length=625306 Score = 113 bits (124), Expect = 4e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || || || | |||||| | ||| | || |||||||| || ||||| ||||| || Sbjct 412918 CCACCACGGAGACGGAGCACGAGATGAAGCGTCGACTCCTTCTGGATGTTGTAGTCGGCG 412977 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 || || || |||| ||||||||||| ||||| |||| | || |||||||||| || Sbjct 412978 AGCGTGCGGCCGTCTTCCAGCTGTTTCCCCGCGAAAATCAATCGCTGCTGGTCCGGCGGG 413037 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | ||||||||||| |||||| ||| || | | ||| || ||| || || Sbjct 413038 ATTCCTTCCTTGTCTTGGATCTTCGCTTTGACATTGTCGATGGTGTCAGAGGATTCGACC 413097 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATTTT 21178 || | ||| |||||||| || || | ||||| || || || ||||| || Sbjct 413098 TCAAGGGTTATGGTCTTCCCCGTAAGGGTTTTCACGAAGATCTGCATCTT 413147 Score = 100 bits (110), Expect = 2e-16 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 20966 CACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTC 21025 ||||| || | || |||||||| || ||||| ||||| |||| ||| | |||| || Sbjct 276017 CACCAAGTGAAGTGTAGACTCCTTCTGGATGTTGTAGTCAGCCAATGTTCTGCCGTCTTC 275958 Query 21026 CAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGC 21085 ||||| || || || | || || |||||||| ||| || | |||||| ||||| Sbjct 275957 AAGCTGCTTTCCGGCGAAGATCAGCCTCTGCTGATCCGGAGGAATGCCTTCTTTGTCCTG 275898 Query 21086 GATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTT 21145 |||||| ||||| | | | | || || | |||| |||| |||||||||||| Sbjct 275897 GATCTTGGCCTTCACGTTGTCAATGGTGTCCGAGCTCTCCACCTCCAGGGTAATGGTCTT 275838 Query 21146 GCCGGTTAACGTTTTGACAAATATTTGCAT 21175 ||| || || ||||| || || || ||||| Sbjct 275837 GCCCGTCAAGGTTTTAACGAAGATCTGCAT 275808 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || || |||||||| || | ||| | ||| |||||||| |||||||| ||||| || Sbjct 275806 CCTCCACGAAGCCTGAGAACTAGATGAAGAGTCGACTCCTTCTGAATGTTGTAGTCAGCA 275747 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 || ||| | ||||||| ||||| || || || | || || | |||||||||| || Sbjct 275746 AGAGTTCGTCCGTCCTCGAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAGGG 275687 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | || || || || || || || || | ||| || ||| | |||| Sbjct 275686 ATTCCCTCTTTATCCTGAATTTTGGCCTTGACGTTATCGATTGTGTCAGAGCTCTCCACC 275627 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 || | ||| || ||||| || |||| |||||||| ||||||||||| Sbjct 275626 TCGAGGGTGATCGTCTTTCCCGTTAGGGTTTTGACGAATATTTGCAT 275580 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || || || | ||| |||| ||| | ||| |||||||| || ||||| ||||| ||| Sbjct 276490 CCACCACGAAGACGGAGAACCAAATGAAGAGTCGACTCCTTCTGGATGTTGTAGTCGGCC 276431 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 | || | | ||||| |||||||| || || | || || | |||||||||| || Sbjct 276430 AATGTGCGACCATCCTCAAGCTGTTTCCCAGCGAAGATGAGACGCTGCTGGTCCGGAGGG 276371 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | ||||||||||| ||||||| ||||| | | | || || | ||| Sbjct 276370 ATCCCTTCCTTGTCTTGGATCTTTGCCTTCACGTTATCAATCGTGTCCGAGCTCTCAACC 276311 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 |||| || |||||||| ||||| || || || || || || ||||| Sbjct 276310 TCCAGAGTGATGGTCTTACCGGTCAATGTCTTCACGAAAATCTGCAT 276264 >seq49 Length=794425 Score = 111 bits (122), Expect = 1e-19 Identities = 163/229 (71%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || |||| ||| | |||||||| |||||| || || || || || ||||| || || || Sbjct 170240 CCACCTCTCAGACGGAGCACCAAATGCAAGGTTGATTCTTTCTGTATGTTGTAATCTGCA 170299 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 || ||| | | ||||| ||||||||||| || | || ||||||||||||||| || Sbjct 170300 AGCGTTCGACCATCCTCTAGCTGTTTGCCAGCGAATATGAGTCTCTGCTGGTCCGGAGGG 170359 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGC--TCCG 21126 | ||||||||||| |||||| || || | | | | ||| | ||| || || Sbjct 170360 ATCCCTTCCTTGTCTTGAATCTTTGCCTTGACATTGTCAATAGTGT--CCGAGCTTTCAA 170417 Query 21127 TTTCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 ||||| || ||||| ||||| || | || ||||| || || ||||| Sbjct 170418 CTTCCAATGTTATGGTTTTGCCTGTAAGAGTCTTGACGAAGATCTGCAT 170466 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || |||| || ||| || |||| |||| || || || || || || || || || || Sbjct 170696 CCTCCTCTCAACCTAAGAACCAAGTGCAGGGTTGATTCTTTCTGGATATTGTAATCTGCA 170755 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 || ||| || | || || ||||| ||||| || | ||||| |||||||||||| || Sbjct 170756 AGAGTTCGGCCATCTTCAAGCTGCTTGCCTGCGAAGATAAGCCTCTGCTGGTCCGGAGGA 170815 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | ||||||||||| |||||| || || | | ||| ||| || | ||| | Sbjct 170816 ATCCCTTCCTTGTCCTGAATCTTTGCCTTGACATTGTCGATAGTGTCCGAGCTCTCAACT 170875 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 || | ||| ||||| ||||| || | ||||| ||||| || ||||| Sbjct 170876 TCTAGGGTGATGGTTTTGCCTGTAAGGGTTTTAACAAAGATCTGCAT 170922 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 20979 GTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCC 21038 || |||||||| || ||||| || || || || || | | ||||| ||||||||||| Sbjct 170042 GTTGACTCCTTCTGTATGTTGTAATCAGCAAGAGTGCGACCATCCTCTAGCTGTTTGCCG 170101 Query 21039 GCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTTTTGTTTC 21098 || | || |||||||| || ||| || | ||||||||||| ||||| ||| Sbjct 170102 GCGAAGATGAGTCTCTGTTGATCCGGAGGGATTCCTTCCTTGTCTTGAATCTTCGCTTTA 170161 Query 21099 ACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGGTTAACGTT 21158 || | | ||| || || | |||| ||||| || ||||| || ||||| | || Sbjct 170162 ACATTGTCGATTGTGTCTGAGCTCTCCACTTCCAATGTTATGGTTTTACCGGTAAGGGTC 170221 Query 21159 TTGACAAATATTTGCAT 21175 ||||||||||| ||||| Sbjct 170222 TTGACAAATATCTGCAT 170238 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || |||| || ||| || |||| |||| || ||||| || || || || || || || Sbjct 170468 CCTCCTCTCAACCTAAGAACCAAGTGCAGGGTTGACTCTTTCTGGATATTGTAATCAGCG 170527 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 || || || | || || ||||||||||| || | || |||||||| |||||| || Sbjct 170528 AGAGTGCGGCCATCTTCAAGCTGTTTGCCTGCGAAGATGAGTCTCTGTTGGTCCGGAGGG 170587 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | ||||||||||| ||||| ||| || | | ||| || || | ||| | Sbjct 170588 ATCCCTTCCTTGTCTTGAATCTTAGCTTTAACATTGTCGATTGTGTCTGAGCTCTCAACT 170647 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 || | ||| ||||| ||||| || | |||||||| || || ||||| Sbjct 170648 TCTAGGGTGATGGTTTTGCCAGTGAGGGTTTTGACGAAGATCTGCAT 170694 Score = 89.7 bits (98), Expect = 4e-13 Identities = 157/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 20947 TTCCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCG 21006 |||| || || || | ||| || | || | || ||||| || |||||||| || |||| Sbjct 169782 TTCCACCACGGAGACGGAGAACAAGGTGAAGTGTCGACTCTTTCTGAATGTTGTAATCCG 169841 Query 21007 CCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGG 21066 | || || | | || || ||||| || || ||| | || || ||||||||||| | Sbjct 169842 CTAGAGTCCGACCATCTTCAAGCTGCTTCCCGGCAAATATTAGCCTCTGCTGGTCAGGTG 169901 Query 21067 GCACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCG 21126 | | ||||||||||| |||||| || || | | | | |||||| | ||| Sbjct 169902 GGATCCCTTCCTTGTCCTGGATCTTGGCCTTGACATTGTCAATCGTATCAGAGCTCTCGA 169961 Query 21127 TTTCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 || | || |||||||| || || || || ||||||||||| ||||| Sbjct 169962 CCTCAAGAGTGATGGTCTTTCCCGTCAAAGTCTTGACAAATATCTGCAT 170010 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || |||| | ||| || |||| || | || ||||||||||| || || || || ||| Sbjct 170924 CCTCCTCTTAACCTAAGAACCAAGTGAAGGGTTGACTCCTTTTGGATATTGTAATCAGCC 170983 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 | || || | ||||| |||||||| || ||| | || || ||||| || ||| || Sbjct 170984 AAAGTACGGCCATCCTCGAGCTGTTTACCGGCAAAGATCAGCCTCTGTTGATCCGGAGGG 171043 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | ||||| || || ||||| || || | | ||| ||||| | ||| | Sbjct 171044 ATTCCTTCTTTATCCTGAATCTTAGCCTTGACATTGTCGATGGTATCCGAGCTCTCAACT 171103 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 || | ||| ||||| ||||| || | ||||| ||||| |||||||| Sbjct 171104 TCTAGGGTGATGGTTTTGCCAGTGAGGGTTTTAACAAAAATTTGCAT 171150 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || |||| || ||| || |||| || | || ||||| ||||| || || || || ||| Sbjct 171152 CCACCTCTCAACCTAAGAACCAAGTGAAGGGTTGACTCTTTTTGGATATTGTAATCAGCC 171211 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 || ||| || | ||||| |||||||| || ||| | || || ||||||||||| || Sbjct 171212 AGAGTTCGGCCATCCTCGAGCTGTTTACCGGCAAAGATGAGCCTCTGCTGGTCGGGAGGG 171271 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGC--TCCG 21126 | ||||| || || |||||| || || | | ||| || | ||| || || Sbjct 171272 ATTCCTTCTTTATCCTGGATCTTGGCCTTGACGTTGTCGATGGTGT--CCGAGCTTTCTA 171329 Query 21127 TTTCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 || | ||| || |||||||| || | || || ||||| || ||||| Sbjct 171330 CCTCGAGGGTTATCGTCTTGCCTGTAAGAGTCTTAACAAAGATCTGCAT 171378 >seq442 Length=166222 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || || ||||||||||| | ||| | || |||||||| || ||||| ||||| || Sbjct 81100 CCACCACGGAGCCTGAGCACGAGATGAAGGGTCGACTCCTTCTGGATGTTGTAGTCAGCA 81041 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 || || || ||||||| || || || || || | || | |||||||||||| || Sbjct 81040 AGAGTCCGGCCGTCCTCGAGTTGCTTTCCGGCGAAGATCAACCTCTGCTGGTCCGGAGGA 80981 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | ||||||||||| |||||| || || | | ||| || || | |||| Sbjct 80980 ATACCTTCCTTGTCTTGGATCTTGGCCTTGACGTTGTCGATGGTGTCGGAGCTCTCCACC 80921 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 || | ||| || ||||| || |||| |||||||| || || ||||| Sbjct 80920 TCGAGGGTGATCGTCTTTCCTGTTAGGGTTTTGACGAAGATCTGCAT 80874 Score = 104 bits (114), Expect = 2e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 20979 GTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCC 21038 || |||||||| || ||||| ||||| |||| ||| || |||| || || || || || Sbjct 81298 GTAGACTCCTTCTGGATGTTGTAGTCAGCCAAAGTTCGGCCGTCTTCAAGTTGCTTTCCG 81239 Query 21039 GCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTTTTGTTTC 21098 || | || | ||||||||| ||| || | ||||||||||| ||| || ||| Sbjct 81238 GCGAAGATCAATCTCTGCTGATCCGGAGGAATACCTTCCTTGTCCTGGATTTTAGCCTTC 81179 Query 21099 ACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGGTTAACGTT 21158 || | | | | ||| || | |||| ||||| || |||||||| ||||| ||||| Sbjct 81178 ACGTTGTCAATAGTGTCGGAGCTCTCCACTTCCAAAGTGATGGTCTTTCCGGTCAACGTC 81119 Query 21159 TTGACAAATATTTGCAT 21175 ||||| || |||||||| Sbjct 81118 TTGACGAAGATTTGCAT 81102 Score = 95.1 bits (104), Expect = 1e-14 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 20966 CACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTC 21025 ||||| || | ||| |||||||| |||||||| || || |||| || | | ||||| Sbjct 81767 CACCAAGTGAAGAGTCGACTCCTTCTGAATGTTGTAATCGGCCAATGTGCGACCATCCTC 81708 Query 21026 CAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGC 21085 ||||| || || || | || || | |||||||||| || | ||||||||||| Sbjct 81707 GAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGGTCCGGAGGAATACCTTCCTTGTCCTG 81648 Query 21086 GATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTT 21145 |||||| ||||| | | ||| || ||| | ||| |||| ||| || ||||| Sbjct 81647 GATCTTCGCCTTCACGTTGTCGATTGTGTCAGAGCTCTCGACCTCCAAGGTGATTGTCTT 81588 Query 21146 GCCGGTTAACGTTTTGACAAATATTTGCAT 21175 |||||| | || || || || |||||||| Sbjct 81587 GCCGGTGAGTGTCTTCACGAAAATTTGCAT 81558 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 20979 GTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCC 21038 || |||||||| || ||||| ||||| |||| || | | ||||| ||||| || || Sbjct 81982 GTCGACTCCTTCTGGATGTTGTAGTCAGCCAATGTGCGACCATCCTCAAGCTGCTTTCCA 81923 Query 21039 GCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTTTTGTTTC 21098 || |||| || | ||||||||| || | ||||||||||| |||||| ||| Sbjct 81922 GCGAAAATGAGACGCTGCTGGTCTGGAGGGATACCTTCCTTGTCCTGGATCTTCGCCTTC 81863 Query 21099 ACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGGTTAACGTT 21158 || | | | | ||| ||| | ||| ||| | ||| || ||||||||||| | ||| Sbjct 81862 ACGTTGTCAATAGTGTCAGAGCTCTCGACTTCAAGGGTGATTGTCTTGCCGGTAAGGGTT 81803 Query 21159 TTGACAAATATTTGCAT 21175 || || ||||| ||||| Sbjct 81802 TTCACGAATATCTGCAT 81786 >seq187 Length=227058 Score = 95.1 bits (104), Expect = 1e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || || || | ||| |||| || | || |||||||| || ||||| ||||| || Sbjct 169679 CCACCACGGAGACGGAGGACCAGGTGAAGCGTCGACTCCTTCTGGATGTTGTAGTCGGCG 169738 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 ||||| | ||||||| ||||| || || || |||| | || |||||||||| || Sbjct 169739 AGGGTGCGTCCGTCCTCGAGCTGCTTCCCGGCGAAAATCAATCGCTGCTGGTCCGGAGGG 169798 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | ||||||||||| |||||| || || | | ||| || || || ||| Sbjct 169799 ATTCCTTCCTTGTCCTGGATCTTCGCCTTGACATTGTCGATGGTGTCGGAGGACTCGACC 169858 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATTTT 21178 || | ||| || ||||| || || | ||||| || || || |||||||| Sbjct 169859 TCAAGGGTGATTGTCTTCCCCGTCAGGGTTTTCACGAAGATCTGCATTTT 169908 >seq70 Length=414679 Score = 89.7 bits (98), Expect = 4e-13 Identities = 163/239 (68%), Gaps = 0/239 (0%) Strand=Plus/Plus Query 20948 TCCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGC 21007 ||| |||| ||| | ||| |||| || | || |||||||| || ||||| |||||||| Sbjct 19319 TCCTCCTCTCAGACGGAGAACCAAGTGAAGCGTCGACTCCTTCTGGATGTTGTAGTCCGC 19378 Query 21008 CAGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGG 21067 || || |||| |||||||| || || || | || || | |||||| ||| || Sbjct 19379 GAGAGTCCTTCCGTCTTCCAGCTGCTTCCCGGCGAAGATCAGACGCTGCTGATCCGGCGG 19438 Query 21068 CACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGT 21127 | ||||||||||| |||||| ||||| | | ||| ||||| | || Sbjct 19439 GATCCCTTCCTTGTCCTGGATCTTCGCCTTCACATTGTCGATCGTATCCGACGATTCAAC 19498 Query 21128 TTCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATTTTGAATCTCT 21186 || | ||| || ||||| || |||| ||||| || || || ||||| || ||||| Sbjct 19499 CTCTAGGGTTATCGTCTTCCCCGTTAGGGTTTTCACGAAGATCTGCATCTTTCTTCTCT 19557 >seq5102 Length=3010 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 20979 GTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCC 21038 || |||||||| || ||||||||||| |||| || | | ||||| |||||||| || Sbjct 2729 GTCGACTCCTTCTGGATGTTATAGTCAGCCAATGTGCGACCATCCTCGAGCTGTTTTCCA 2788 Query 21039 GCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTTTTGTTTC 21098 || | || || | |||||||||| || | |||||||||||| |||||| ||| Sbjct 2789 GCGAAGATGAGACGCTGCTGGTCCGGAGGAATGCCTTCCTTGTCCTGGATCTTCGCCTTC 2848 Query 21099 ACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGGTTAACGTT 21158 || | | | | || || | ||| ||| | || || ||||| || || || || Sbjct 2849 ACGTTGTCAATGGTGTCGGAGCTCTCGACTTCAAGTGTGATTGTCTTCCCCGTCAAGGTC 2908 Query 21159 TTGACAAATATTTGCAT 21175 ||||| || || ||||| Sbjct 2909 TTGACGAAAATCTGCAT 2925 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 422224369949888