Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thlaspi_20arvense_20[genbank_20GCA_5F000956625.1_202015-03-19] 6,768 sequences; 343,012,389 total letters Query= NC_001962.1 Length=128413 Score E Sequences producing significant alignments: (Bits) Value seq49 104 2e-17 >seq49 Length=794425 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 25094 |||||||| || | ||||| | || ||||||||||| ||| ||| || | | Sbjct 171150 ATGCAAATTTTTGTTAAAACCCTCACTGGCAAAACCATCACCCTAGAAGTTGAGAGCTCG 171091 Query 25095 GAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 25154 || || | | | || ||||| || ||| ||||||||||| | || |||||| Sbjct 171090 GATACCATCGACAATGTCAAGGCTAAGATTCAGGATAAAGAAGGAATCCCTCCGGATCAA 171031 Query 25155 CAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAAT 25214 || || || |||||||| || ||||| | || ||| | ||| |||| ||||||||| Sbjct 171030 CAGAGGCTGATCTTTGCCGGTAAACAGCTCGAGGATGGCCGTACTTTGGCTGATTACAAT 170971 Query 25215 ATTCAAAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 25261 || |||||||| || || |||||| |||| | | ||| ||||||| Sbjct 170970 ATCCAAAAGGAGTCAACCCTTCACTTGGTTCTTAGGTTAAGAGGAGG 170924 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 410762915425952