Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thlaspi_20arvense_20[genbank_20GCA_5F000956625.1_202015-03-19] 6,768 sequences; 343,012,389 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq49 127 3e-24 seq73 98.7 1e-15 >seq49 Length=794425 Score = 127 bits (140), Expect = 3e-24 Identities = 166/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || || | ||||| || ||||||||||| ||||| | || ||||| Sbjct 170466 ATGCAGATCTTCGTCAAGACTCTTACAGGCAAAACCATAACATTGGAAGTTGAAAGCTCG 170407 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || || ||| ||| | || || |||||||| || ||||| || || || || || Sbjct 170406 GACACTATTGACAATGTCAAGGCAAAGATTCAAGACAAGGAAGGGATCCCTCCGGACCAG 170347 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || || || || || || || ||||| |||||||| ||||||| | | |||||| || Sbjct 170346 CAGAGACTCATATTCGCTGGCAAACAGCTAGAGGATGGTCGAACGCTTGCAGATTACAAC 170287 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 || || ||||||||||| ||||||||||| | ||| | |||||||||| Sbjct 170286 ATACAGAAAGAATCAACCTTGCATTTGGTGCTCCGTCTGAGAGGTGGTAT 170237 Score = 122 bits (134), Expect = 1e-22 Identities = 167/231 (72%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGA-AGCAAA 124597 |||||||| ||| | || || || || |||||||| || || |||| |||| ||| Sbjct 171150 ATGCAAATTTTTGTTAAAACCCTCACTGGCAAAACCATCACCCTAGAAGTTGAGAGCTCG 171091 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 ||||| || ||| | || || ||||| ||||||||||| || || || ||||| Sbjct 171090 -GATACCATCGACAATGTCAAGGCTAAGATTCAGGATAAAGAAGGAATCCCTCCGGATCA 171032 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 ||| ||||| || ||||| || ||||| | |||||| | || || || | ||||| || Sbjct 171031 ACAGAGGCTGATCTTTGCCGGTAAACAGCTCGAGGATGGCCGTACTTTGGCTGATTACAA 170972 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 ||| ||||| || ||||| | || |||||| | | ||| |||| ||||| Sbjct 170971 TATCCAAAAGGAGTCAACCCTTCACTTGGTTCTTAGGTTAAGAGGAGGTAT 170921 Score = 109 bits (120), Expect = 8e-19 Identities = 169/239 (71%), Gaps = 2/239 (1%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || ||| | ||||| || |||||||| || ||||| | ||| | ||| Sbjct 171378 ATGCAGATCTTTGTTAAGACTCTTACAGGCAAGACGATAACCCTCGAGGTAGAAAGCTCG 171319 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || || || || | || || || || ||||||||||| || || || || || Sbjct 171318 GACACCATCGACAACGTCAAGGCCAAGATCCAGGATAAAGAAGGAATCCCTCCCGACCAG 171259 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || ||||| || ||||| || ||||| | |||||| | ||||| | | ||||| ||| Sbjct 171258 CAGAGGCTCATCTTTGCCGGTAAACAGCTCGAGGATGGCCGAACTCTGGCTGATTACAAT 171199 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTT-TTACGTTTACGAGGTGGTATTAAAAATT 124776 || |||||||| ||||| | || |||||| ||| ||| | |||||||||| ||| || Sbjct 171198 ATCCAAAAAGAGTCAACCCTTCACTTGGTTCTTAGGTTGA-GAGGTGGTATGCAAATTT 171141 Score = 107 bits (118), Expect = 3e-18 Identities = 166/232 (72%), Gaps = 4/232 (2%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGA-AGCAAA 124597 ||||| || ||| | || || || ||||||||||| || || |||| |||| ||| Sbjct 170922 ATGCAGATCTTTGTTAAAACCCTTACAGGCAAAACCATCACCCTAGAAGTTGAGAGCTCG 170863 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 || || || ||| | || || ||||| || || ||||| || || || || || Sbjct 170862 -GACACTATCGACAATGTCAAGGCAAAGATTCAGGACAAGGAAGGGATTCCTCCGGACCA 170804 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 || |||||||| || ||||| || || | || ||| | ||||| | | |||||| || Sbjct 170803 GCAGAGGCTTATCTTCGCAGGCAAGCAGCTTGAAGATGGCCGAACTCTTGCAGATTACAA 170744 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTT-TTACGTTTACGAGGTGGTAT 124768 ||| || ||||||||||| |||| |||||| ||| ||| | |||| ||||| Sbjct 170743 TATCCAGAAAGAATCAACCCTGCACTTGGTTCTTAGGTTGA-GAGGAGGTAT 170693 >seq73 Length=838620 Score = 98.7 bits (108), Expect = 1e-15 Identities = 95/122 (78%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 124629 CAAGATAAAGAAGGTATACCACCTGATCAACAAAGGCTTATTTTTGCAGGAAAACAATTA 124688 || || ||||||||||||||||| ||||| |||||||| || ||||| || || ||| | Sbjct 422932 CAGGACAAAGAAGGTATACCACCAGATCAGCAAAGGCTGATATTTGCCGGGAAGCAACTG 422991 Query 124689 GAGGATAGTCGAACATTAGAAGATTATAATATTCAAAAAGAATCAACTTTGCATTTGGTT 124748 |||||| | |||||| | | ||||| || || || ||||| || ||| | ||| |||| Sbjct 422992 GAGGATGGACGAACACTGGCGGATTACAACATCCAGAAAGAGTCTACTCTTCATCTGGTC 423051 Query 124749 TT 124750 || Sbjct 423052 TT 423053 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 755392088422400