Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thlaspi_20arvense_20[genbank_20GCA_5F000956625.1_202015-03-19] 6,768 sequences; 343,012,389 total letters Query= NC_002520.1 Length=232392 Score E Sequences producing significant alignments: (Bits) Value seq466 91.5 2e-13 seq73 91.5 2e-13 >seq466 Length=125450 Score = 91.5 bits (100), Expect = 2e-13 Identities = 104/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 146048 GTTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCT 146107 ||||||||||| || || || ||||| || | ||| || ||||| || || ||||| Sbjct 78529 GTTCCACCTCTGAGCCTCAAGACCAAGTGAAGAGTCGACTCTTTCTGGATGTTGTAATCC 78588 Query 146108 GAAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGA 146167 | || || | | ||| |||| |||||| |||||||| |||| ||| || |||||||| Sbjct 78589 GCCAGCGTCCGACCATCTTCTAGTTGTTTCCCAGCAAATATCAGTCTCTGTTGATCCGGT 78648 Query 146168 GGAATTCCTTCTTTATCTTG 146187 || || || ||||| || || Sbjct 78649 GGTATCCCCTCTTTGTCCTG 78668 >seq73 Length=838620 Score = 91.5 bits (100), Expect = 2e-13 Identities = 104/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 146048 GTTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCT 146107 ||||||||||| || || || |||| ||| | |||||| ||||| || || ||||| Sbjct 423071 GTTCCACCTCTGAGCCTCAAGACCAGATGAAGAGTAGACTCTTTCTGGATGTTGTAATCC 423012 Query 146108 GAAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGA 146167 | || |||| | ||| || | ||| || || ||||| |||| ||||||||||| || Sbjct 423011 GCCAGTGTTCGTCCATCCTCCAGTTGCTTCCCGGCAAATATCAGCCTTTGCTGATCTGGT 422952 Query 146168 GGAATTCCTTCTTTATCTTG 146187 || || |||||||| || || Sbjct 422951 GGTATACCTTCTTTGTCCTG 422932 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 743463497666560