Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thlaspi_20arvense_20[genbank_20GCA_5F000956625.1_202015-03-19] 6,768 sequences; 343,012,389 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq252 109 4e-19 seq65 105 4e-18 seq49 102 5e-17 seq70 98.7 6e-16 seq187 95.1 8e-15 seq442 82.4 5e-11 >seq252 Length=291119 Score = 109 bits (120), Expect = 4e-19 Identities = 163/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || || || || || ||||| || | |||| ||| ||||| |||||||| |||| Sbjct 180001 CCTCCACGGAGTCTGAGAACCAGATGGAGAGTAGATTCCTTCTGGATGTTGTAATCGGCA 180060 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || |||| |||| ||||||||||| || ||||| || |||| |||||| || || Sbjct 180061 AGAGTACGGCCGTCTTCCAACTGCTTTCCGGCGAAGATAAGCCTCTGCTGATCCGGTGGG 180120 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTT-AGATCGGCTATCGAATCGGTCGATTCGAC 34341 | | |||||| || ||| || ||||| | | | | |||| || | ||| || Sbjct 180121 ATTCCCTCCTTATCCTGGATC-TTGGCTTTAACGTTGTCGATCGTGTCAGAACTTTCCAC 180179 Query 34342 GTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390 || | ||||| || || ||||||||||| || || |||||||||||| Sbjct 180180 CTCGAGGGTGATCGTCTTTCCGGTGAGAGTCTTAACGAAGATCTGCATC 180228 Score = 86.0 bits (94), Expect = 4e-12 Identities = 162/232 (70%), Gaps = 10/232 (4%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || ||||| | || ||||| ||| | ||| || ||||| |||||||| |||| | Sbjct 178861 CCACCACGCAGACGCAACACCAAGTGAAGAGTCGACTCCTTCTGAATGTTGTAATCGGCC 178920 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 | || | || || | |||||| || ||||| ||||| ||||||||||| || Sbjct 178921 AATGTGCGACCATCCTCGAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGGTCCGGAGGG 178980 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCG-GTCG----ATT 34337 | || |||||||| ||| || ||||| || | |||| ||| | |||| | Sbjct 178981 ATGCCTTCCTTGTCCTGGATC-TTAGCTTT-GA--CGTTATC-AATGGTGTCGGAGCTCT 179035 Query 34338 CGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 |||| || | ||||| || |||||||| | ||| ||||| || |||||||| Sbjct 179036 CGACTTCAAGGGTGATCGTCTTGCCGGTTAAAGTCTTCACGAAAATCTGCAT 179087 Score = 82.4 bits (90), Expect = 5e-11 Identities = 158/231 (68%), Gaps = 8/231 (3%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || ||||| | || ||||| ||| | ||| || || || |||||||| |||| | Sbjct 179089 CCACCACGCAGACGCAACACCAAGTGGAGAGTCGACTCCTTTTGAATGTTGTAATCGGCC 179148 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 | || | || || | |||||| || ||||| ||||| |||||||| || || Sbjct 179149 AATGTGCGACCATCCTCGAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGATCCGGAGGA 179208 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTC---GAT-TC 34338 | || ||||| || |||||| ||| | || |||||| | ||| | | || Sbjct 179209 ATGCCTTCCTTATCCTGTATCTTGGCCTTGACAT----TATCGATTGTGTCAGAGCTCTC 179264 Query 34339 GACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || || | || || || ||||| ||||| || ||||||||||||||||| Sbjct 179265 CACCTCGAGTGTAATCGTCTTGCCAGTGAGTGTCTTCACAAAGATCTGCAT 179315 >seq65 Length=625306 Score = 105 bits (116), Expect = 4e-18 Identities = 143/194 (74%), Gaps = 4/194 (2%) Strand=Plus/Plus Query 34199 TCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAA 34258 || ||||| ||||||||||||| ||| ||| |||| |||| ||| || || |||||| Sbjct 412954 TCCTTCTGGATGTTGTAGTCGGCGAGCGTGCGGCCGTCTTCCAGCTGTTTCCCCGCGAAA 413013 Query 34259 ATGAGCCGCTGCTGGT-CGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTT-AGAT 34316 || | |||||||||| || |||| | | |||||||| ||| || ||||| | || Sbjct 413014 ATCAATCGCTGCTGGTCCGGCGGG-ATTCCTTCCTTGTCTTGGATC-TTCGCTTTGACAT 413071 Query 34317 CGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCA 34376 | | || | || | |||||||| || | || ||||| || || || || ||||||| Sbjct 413072 TGTCGATGGTGTCAGAGGATTCGACCTCAAGGGTTATGGTCTTCCCCGTAAGGGTTTTCA 413131 Query 34377 CAAAGATCTGCATC 34390 | |||||||||||| Sbjct 413132 CGAAGATCTGCATC 413145 Score = 100 bits (110), Expect = 2e-16 Identities = 161/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || || ||||| || |||| ||| | ||| || ||||| |||||||| |||| | Sbjct 275578 CCACCACGGAGCCTGAGGACCAAGTGAAGAGTCGACTCCTTCTGGATGTTGTAATCGGCC 275519 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 | | | |||| ||||||||||| || ||||| || |||| |||||| || || Sbjct 275518 AATGTTCTGCCGTCTTCCAACTGCTTTCCGGCGAAGATTAGCCTCTGCTGATCCGGTGGG 275459 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTT-AGATCGGCTATCGAATCGGTCGATTCGAC 34341 | | |||||| || ||| || ||||| | | | | |||| || | ||| || Sbjct 275458 ATTCCCTCCTTATCCTGGATC-TTGGCTTTAACGTTGTCGATCGTGTCAGAGCTTTCCAC 275400 Query 34342 GTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390 || | ||||| ||||| ||||||||||| || || |||||||||||| Sbjct 275399 CTCAAGGGTGATCGTTTTCCCGGTGAGAGTCTTAACGAAGATCTGCATC 275351 >seq49 Length=794425 Score = 102 bits (112), Expect = 5e-17 Identities = 152/213 (71%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 ||||||| || || || |||||||||||||||||| || | ||| || | || Sbjct 170255 AGCACCAAATGCAAGGTTGATTCTTTCTGTATGTTGTAATCTGCAAGCGTTCGACCATCC 170314 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGT-CGACGGGCACGCTCTCCTTGTC 34296 || | ||| ||||| ||||| ||||| | |||||||| || ||| | || |||||||| Sbjct 170315 TCTAGCTGTTTGCCAGCGAATATGAGTCTCTGCTGGTCCGGAGGGATCCCT-TCCTTGTC 170373 Query 34297 GGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGT 34356 |||||| ||| | || | | || | || | ||| || |||| || ||||| Sbjct 170374 TTGAATCTTTGCCTTGACATTGTCAATAGTGTCCGAGCTTTCAACTTCCAATGTTATGGT 170433 Query 34357 TTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 |||||| || ||||| || || ||||||||||| Sbjct 170434 TTTGCCTGTAAGAGTCTTGACGAAGATCTGCAT 170466 Score = 98.7 bits (108), Expect = 6e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || | || ||| || |||| ||| | || ||||||||| || ||||| || | Sbjct 170696 CCTCCTCTCAACCTAAGAACCAAGTGCAGGGTTGATTCTTTCTGGATATTGTAATCTGCA 170755 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || ||| | || || | ||||||||||||||| || |||| ||||||||| || Sbjct 170756 AGAGTTCGGCCATCTTCAAGCTGCTTGCCTGCGAAGATAAGCCTCTGCTGGTCCGGAGGA 170815 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | | |||||||| |||||| ||| | || | | || | || | || || Sbjct 170816 ATCCCTTCCTTGTCCTGAATCTTTGCCTTGACATTGTCGATAGTGTCCGAGCTCTCAACT 170875 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || | |||||||||||||| || || ||||| |||||||||||||| Sbjct 170876 TCTAGGGTGATGGTTTTGCCTGTAAGGGTTTTAACAAAGATCTGCAT 170922 Score = 84.2 bits (92), Expect = 1e-11 Identities = 159/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || | || ||| || |||| ||| | || |||||||| || ||||| || | Sbjct 170468 CCTCCTCTCAACCTAAGAACCAAGTGCAGGGTTGACTCTTTCTGGATATTGTAATCAGCG 170527 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTC-GACGGG 34281 || ||| | || || | ||| ||||||||||| ||||| | ||| ||||| | ||| Sbjct 170528 AGAGTGCGGCCATCTTCAAGCTGTTTGCCTGCGAAGATGAGTCTCTGTTGGTCCGGAGGG 170587 Query 34282 CACGCTCTCCTTGTCGGCTATCTTTTGCTTTAG-ATCGGCTATCGAATCGGTCGATTCGA 34340 | || |||||||| ||||| |||||| || | | || | || | || | Sbjct 170588 ATCCCT-TCCTTGTCTTGAATCTTA-GCTTTAACATTGTCGATTGTGTCTGAGCTCTCAA 170645 Query 34341 CGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 | || | |||||||||||||| ||||| ||||| || ||||||||||| Sbjct 170646 CTTCTAGGGTGATGGTTTTGCCAGTGAGGGTTTTGACGAAGATCTGCAT 170694 >seq70 Length=414679 Score = 98.7 bits (108), Expect = 6e-16 Identities = 139/193 (72%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 34199 TCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAA 34258 || ||||| ||||||||||| | || | |||| |||| |||||| || ||||| Sbjct 19356 TCCTTCTGGATGTTGTAGTCCGCGAGAGTCCTTCCGTCTTCCAGCTGCTTCCCGGCGAAG 19415 Query 34259 ATGAGCCGCTGCTGGT-CGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATC 34317 || || |||||||| | || |||| | || |||||||| ||||| ||| | || Sbjct 19416 ATCAGACGCTGCTGATCCGGCGGGATCCCT-TCCTTGTCCTGGATCTTCGCCTTCACATT 19474 Query 34318 GGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCAC 34377 | | |||| ||| | |||||| || || | || || || || || || || |||||||| Sbjct 19475 GTCGATCGTATCCGACGATTCAACCTCTAGGGTTATCGTCTTCCCCGTTAGGGTTTTCAC 19534 Query 34378 AAAGATCTGCATC 34390 |||||||||||| Sbjct 19535 GAAGATCTGCATC 19547 >seq187 Length=227058 Score = 95.1 bits (104), Expect = 8e-15 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 || |||||||| | || || ||||| ||||||||||||| || || |||| Sbjct 169694 AGGACCAGGTGAAGCGTCGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGTCCGTCC 169753 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297 || | |||||| || |||||||| | ||||||||||| || | | |||||||| Sbjct 169754 TCGAGCTGCTTCCCGGCGAAAATCAATCGCTGCTGGTCCGGAGGGATTCCTTCCTTGTCC 169813 Query 34298 GCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTT 34357 ||||| ||| | || | | || | |||| || ||||| || | ||||| || Sbjct 169814 TGGATCTTCGCCTTGACATTGTCGATGGTGTCGGAGGACTCGACCTCAAGGGTGATTGTC 169873 Query 34358 TTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || || || || |||||||| ||||||||||| Sbjct 169874 TTCCCCGTCAGGGTTTTCACGAAGATCTGCAT 169905 >seq442 Length=166222 Score = 82.4 bits (90), Expect = 5e-11 Identities = 136/193 (70%), Gaps = 4/193 (2%) Strand=Plus/Minus Query 34199 TCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAA 34258 || ||||| ||||||||||| | || || | || || | |||||| || |||||| Sbjct 81976 TCCTTCTGGATGTTGTAGTCAGCCAATGTGCGACCATCCTCAAGCTGCTTTCCAGCGAAA 81917 Query 34259 ATGAGCCGCTGCTGGTC--GACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGAT 34316 ||||| ||||||||||| || || || || |||||||| ||||| ||| | | Sbjct 81916 ATGAGACGCTGCTGGTCTGGAGGGATAC-CT-TCCTTGTCCTGGATCTTCGCCTTCACGT 81859 Query 34317 CGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCA 34376 | | || | || | ||||| || | ||||| || |||||||| || ||||||| Sbjct 81858 TGTCAATAGTGTCAGAGCTCTCGACTTCAAGGGTGATTGTCTTGCCGGTAAGGGTTTTCA 81799 Query 34377 CAAAGATCTGCAT 34389 | || |||||||| Sbjct 81798 CGAATATCTGCAT 81786 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 323045351406080