Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thlaspi_20arvense_20[genbank_20GCA_5F000956625.1_202015-03-19] 6,768 sequences; 343,012,389 total letters Query= NC_002686.2 Length=124784 Score E Sequences producing significant alignments: (Bits) Value seq45 84.2 2e-11 >seq45 Length=496881 Score = 84.2 bits (92), Expect = 2e-11 Identities = 101/135 (75%), Gaps = 2/135 (1%) Strand=Plus/Plus Query 20401 ATGGCTTTGCCTCCATGTCATATGCTATGC-CAATTTTACGTTGCTAATAATGAATTGTC 20459 ||||| | |||||||| || ||| | ||| || || || ||||| ||| || | || Sbjct 239143 ATGGCACTTCCTCCATGCCACATGTT-TGCACAGTTCTATGTTGCAAATGGCGAGCTTTC 239201 Query 20460 GTGTCAAATGTATCAACGATCCGCTGATATGGGACTGGGTGTTCCTTTCAATATTGCAAG 20519 |||||||||||||| || || ||||||||||| || ||||| || ||||| ||||| Sbjct 239202 ATGTCAAATGTATCAGCGGTCAGCTGATATGGGTCTTGGTGTACCGTTCAACATTGCCTC 239261 Query 20520 TTATGCGCTGCTTAC 20534 ||| | || ||||| Sbjct 239262 ATATTCCCTTCTTAC 239276 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 399151073307760