Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thlaspi_20arvense_20[genbank_20GCA_5F000956625.1_202015-03-19] 6,768 sequences; 343,012,389 total letters Query= NC_003083.1 Length=118584 Score E Sequences producing significant alignments: (Bits) Value seq49 98.7 8e-16 seq252 95.1 9e-15 seq69 89.7 4e-13 seq442 84.2 2e-11 >seq49 Length=794425 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 ||||| | || ||||| |||| |||||| ||||| || ||||| || ||||| || ||| Sbjct 170924 CCTCCTCTTAACCTAAGAACCAAGTGAAGGGTTGACTCCTTTTGGATATTGTAATCAGCC 170983 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | || | ||| || | ||||| || ||| |||| || || ||||||||| || Sbjct 170984 AAAGTACGGCCATCCTCGAGCTGTTTACCGGCAAAGATCAGCCTCTGTTGATCCGGAGGG 171043 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTT 18278 | ||||| ||||| ||| | |||||| | | | || || | ||| | Sbjct 171044 ATTCCTTCTTTATCCTGAATCTTAGCCTTGACATTGTCGATGGTATCCGAGCTCTCAACT 171103 Query 18279 TCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 || | ||||||| ||||||| || | ||||| |||||||||||||| Sbjct 171104 TCTAGGGTGATGGTTTTGCCAGTGAGGGTTTTAACAAAAATTTGCAT 171150 Score = 95.1 bits (104), Expect = 9e-15 Identities = 150/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 18111 CTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAA 18170 ||||| |||| ||| || ||||||||||| || || ||||| || || | ||| | | Sbjct 170708 CTAAGAACCAAGTGCAGGGTTGATTCTTTCTGGATATTGTAATCTGCAAGAGTTCGGCCA 170767 Query 18171 TCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTA 18230 ||||| | || ||||| || ||||||| || || || ||| || | |||||||| Sbjct 170768 TCTTCAAGCTGCTTGCCTGCGAAGATAAGCCTCTGCTGGTCCGGAGGAATCCCTTCCTTG 170827 Query 18231 TCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATG 18290 || ||| | | |||||| | | | |||||| | ||| ||| | ||||||| Sbjct 170828 TCCTGAATCTTTGCCTTGACATTGTCGATAGTGTCCGAGCTCTCAACTTCTAGGGTGATG 170887 Query 18291 CTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 ||||||| || | ||||| ||||| || ||||| Sbjct 170888 GTTTTGCCTGTAAGGGTTTTAACAAAGATCTGCAT 170922 >seq252 Length=291119 Score = 95.1 bits (104), Expect = 9e-15 Identities = 150/212 (71%), Gaps = 6/212 (3%) Strand=Plus/Plus Query 18117 ACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCC 18176 |||| ||||||||| || || || ||||||||||||||||||| |||| | | || || Sbjct 179335 ACCAAGTGAAGTGTAGACTCCTTCTGAATGTTGTAGTCGGCCAATGTTCTGCCGTCCTCA 179394 Query 18177 AATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCA 18236 | || || || || |||| | ||||| |||||| || | ||||||||| || Sbjct 179395 AGCTGCTTTCCGGCGAAGATCAACCTTTGCTGATCCGGAGGAATGCCTTCCTTGTCTTGG 179454 Query 18237 ATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCT---CGGTTTCAATGGTGATGCTT 18293 || | | ||| || | ||| |||| ||| ||| | | |||| ||||| | Sbjct 179455 ATCTTTGCCTTCACGTTGTCAATCGTGT--CCGAGCTCTCCACCTCCAAT-GTGATCGTC 179511 Query 18294 TTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 ||||||||||| ||||| || ||||| ||||| Sbjct 179512 TTGCCGGTCAAGGTTTTAACGAAAATCTGCAT 179543 Score = 84.2 bits (92), Expect = 2e-11 Identities = 146/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 18117 ACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCC 18176 |||| |||||| || || || || ||||||||||| ||||||| ||| || ||| || Sbjct 178879 ACCAAGTGAAGAGTCGACTCCTTCTGAATGTTGTAATCGGCCAATGTGCGACCATCCTCG 178938 Query 18177 AATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCA 18236 | || || || || |||| || | || || ||| || | ||||||||| || Sbjct 178939 AGCTGCTTTCCAGCGAAGATGAGACGCTGCTGGTCCGGAGGGATGCCTTCCTTGTCCTGG 178998 Query 18237 ATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTT 18295 || | | || ||||| | ||| ||||| | |||| ||||| |||||| | || Sbjct 178999 ATCT-TAGCTTTGACGTTATCAATGGTGTCGGAGCTCTCGACTTCAAGGGTGATCGTCTT 179057 Query 18296 GCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 |||||| || || || || ||||| ||||| Sbjct 179058 GCCGGTTAAAGTCTTCACGAAAATCTGCAT 179087 >seq69 Length=847923 Score = 89.7 bits (98), Expect = 4e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 ||||| | || ||||| |||| ||||| || ||||| || || |||||||||||||| Sbjct 38661 CCTCCTCTAAGCCTAAGGACCAAATGAAGCGTCGATTCCTTCTGGATGTTGTAGTCGGCG 38602 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | ||| || |||||||| |||||| || || |||| || | || |||||| || Sbjct 38601 AGTGTCCGACCATCTTCCAGTTGTTTTCCGGCGAAGATCAGCCGCTGCTGATCCGGCGGG 38542 Query 18219 ACGCCTTCCTTATC 18232 | ||||||||| || Sbjct 38541 ATGCCTTCCTTGTC 38528 >seq442 Length=166222 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 18117 ACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCC 18176 |||| ||||||||| || || || || ||||||||||| |||| ||| | ||||| Sbjct 81310 ACCAAGTGAAGTGTAGACTCCTTCTGGATGTTGTAGTCAGCCAAAGTTCGGCCGTCTTCA 81251 Query 18177 AATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCA 18236 | ||| || || || |||| | ||| || |||||| || | |||||||| || Sbjct 81250 AGTTGCTTTCCGGCGAAGATCAATCTCTGCTGATCCGGAGGAATACCTTCCTTGTCCTGG 81191 Query 18237 ATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTG 18296 |||| ||| || | ||| |||||| | ||| ||| | |||||| | || Sbjct 81190 ATTTTAGCCTTCACGTTGTCAATAGTGTCGGAGCTCTCCACTTCCAAAGTGATGGTCTTT 81131 Query 18297 CCGGTCAATGTTTTTACAAAAATTTGCAT 18325 |||||||| || || || || |||||||| Sbjct 81130 CCGGTCAACGTCTTGACGAAGATTTGCAT 81102 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 379312709810160