Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thlaspi_20arvense_20[genbank_20GCA_5F000956625.1_202015-03-19] 6,768 sequences; 343,012,389 total letters Query= NC_003225.3 Length=309286 Score E Sequences producing significant alignments: (Bits) Value seq45 132 1e-25 >seq45 Length=496881 Score = 132 bits (146), Expect = 1e-25 Identities = 150/198 (76%), Gaps = 5/198 (3%) Strand=Plus/Plus Query 35518 AGAA-AATCCAGATGATAGAAGGATGATTATGACGGCATGGAATCCTATGGATCTTCACC 35576 |||| ||||| |||||| || |||| || ||| |||| ||||||||| |||||| | | Sbjct 239081 AGAACAATCCTGATGATCGACGGATTATAATGTCGGCTTGGAATCCTCCTGATCTTAAGC 239140 Query 35577 TTATGGCTCTTCCTCCATGCCACATGACTGCTCAATTTTATGTGGCTAATGGAGAATTGT 35636 | ||||| |||||||||||||||||| ||| || || ||||| || ||||| || | | Sbjct 239141 TGATGGCACTTCCTCCATGCCACATGTTTGCACAGTTCTATGTTGCAAATGGCGAGCTTT 239200 Query 35637 CGTGCCAGTTGTATCAGCG--AAGCGGAGATGTCGGGTTGGGCGTGCCCTTCAATATTGC 35694 | || || |||||||||| ||| || ||| || | || || || ||||| ||||| Sbjct 239201 CATGTCAAATGTATCAGCGGTCAGCTGATATG--GGTCTTGGTGTACCGTTCAACATTGC 239258 Query 35695 ATCATACTCTCTTCTGAC 35712 ||||| || ||||| || Sbjct 239259 CTCATATTCCCTTCTTAC 239276 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 989498188223440