Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thlaspi_20arvense_20[genbank_20GCA_5F000956625.1_202015-03-19] 6,768 sequences; 343,012,389 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq69 158 2e-33 seq146 156 5e-33 seq2 89.7 6e-13 >seq69 Length=847923 Score = 158 bits (174), Expect = 2e-33 Identities = 405/606 (67%), Gaps = 8/606 (1%) Strand=Plus/Minus Query 33582 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGT 33641 || |||||||||||||||| || ||||||| | || || ||||| || || || ||| Sbjct 357030 CACGCGAAATCGCAGTGCAAGCCTTCGTCTCGAGAGATCAACTCGTTGGAGAAGGTTAGT 356971 Query 33642 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAG 33701 || ||||| || || || || || ||||| || || || ||| ||||| |||||| Sbjct 356970 CCCGGCATGAGCCCGCGTTTCTTCAGCCAGAAAATCGAGCAGAAGCTACCGGAGAAGAAG 356911 Query 33702 ATTCCTTCTACTGCA-GCAAAGGCAATAAGTCTCT-CTCCATAACCGGCGCTGTCATGTA 33759 || ||||| || ||| || ||||| | | | || | | | | | | | | | | | Sbjct 356910 ATGCCTTCGAC-GCAGGCGAAGGCGACGATACGCTCCGCGAAAGTCTGGGAT-CCGTCGA 356853 Query 33760 TCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAA 33819 ||||| | ||||| | |||||||| || ||||| || ||||| || || || Sbjct 356852 TCCACGTCATCGCCCACTGCGCCTTCTTCGCGACGCAAGGGATGGTTTCGATTGCGCGAA 356793 Query 33820 AGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTT 33879 | |||| || | | || || | || || | ||||| |||| | ||||| ||||| | Sbjct 356792 ACAGATGGTCTCTCTCCTTGTTGTCCTTGATGTAAGTGTCGAGGAGGAGACTGTACATCT 356733 Query 33880 CCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCT 33939 | ||||| ||||| || || || ||||| || ||||||||| | ||||| | | | Sbjct 356732 CGGAATGGATGTTCTCGATCGCGATCTGGAACCCGTAGAAAGCACGCGCCTCCGAGACTT 356673 Query 33940 GCACTTCTGTACA-AAATCGTTCTGCTAAATTTTCATTCACTATTCCATCACTGGCTGCA 33998 | || || | ||| ||||| || | ||| || || ||||| || ||| || Sbjct 356672 GAACATC-GGACATGAATCGAGAAGCGAGATTCTCCAGAACGATTCCGTCTGAGGCGGCG 356614 Query 33999 AAAAACGCCAATACATGTTTTATAAAATATTTTTCGTC-TGGTGTTAGTTTATTCCAATC 34057 || || || | || ||||| || || | ||| | | || | || || | ||| || Sbjct 356613 AAGAAGGCGAGGACGTGTTTGATGAAGTGCCGCTCGCCGTCGT-TGAGATTCTCCCAGTC 356555 Query 34058 ATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTT 34117 || | ||||| ||| ||||| ||| | |||||||| ||||| || ||||| || Sbjct 356554 GCGACCGTCCTGAGATAGATCGACTTCCTCCGCCGTCCAAAACGATGCTTCGGCCTTCTT 356495 Query 34118 ATACATATTCCAGATGTCATGATATTGGATTGGGAAAATAACAAATCTATTTGGATTTGG 34177 ||||| | |||||| | | || || || ||||| ||| ||||| | ||| |||| Sbjct 356494 GTACATCTCCCAGATCTGTGGGTAGTGAATCGGGAACATACAGAATCTGTCTGGGGTTGG 356435 Query 34178 TGCAAG 34183 | ||| Sbjct 356434 AGTAAG 356429 >seq146 Length=264749 Score = 156 bits (172), Expect = 5e-33 Identities = 412/615 (67%), Gaps = 23/615 (4%) Strand=Plus/Plus Query 33576 ATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAAC 33635 |||||||| |||||||||||||| || || ||||||| || |||||||| || || Sbjct 120984 ATCAAACAAGCGAAATCGCAGTGAAGGCCTTCGTCTCGCGAGATCAATTCGTTGGAGAAA 121043 Query 33636 GTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAA 33695 ||||| || ||||||| || || || || ||||| || || || ||| ||||| Sbjct 121044 GTGAGCCCAGGCATTAAACCTCGTTTCTTCAGCCAGAAAATCGAGCAGAAGCTACCGGAG 121103 Query 33696 AAGAAGATTCCTTCTACTGCAGC-AAAGGCA--ATAAGTCTCTCTCCATAACCGGCGCTG 33752 |||||||| ||||| || ||| |||| || ||| || || | | || ||| Sbjct 121104 AAGAAGATACCTTCGACGCAAGCGAAAGCCACGATACGT---TCAGCGAA----GCTCTG 121156 Query 33753 TCAT--GT--ATCCACTTTTGAGCCCAATCG-GCCTTCTTTTTTACACAAGGCATCGTTT 33807 || || ||||| || |||| |||| ||| | || || || || || |||| Sbjct 121157 AGATCCGTCGATCCATTTCATCGCCC-ATCGCGCCATTTTCGCGACGCAGGGAATGGTTT 121215 Query 33808 CTATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAA 33867 | || || ||||||| | | | || || | ||||| | || ||||||| | | Sbjct 121216 CGATTGCGCGGAAGAGATGATCTCTCTCTTTGTTGTCTTTGATGTAGGTATCGAGAAGGA 121275 Query 33868 GACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAG 33927 |||| ||||| || || ||||| || || || || ||||| ||||||||||| | || Sbjct 121276 GACTGTACATCTCGGAGTGAATATTCTCGATCGCGATCTGGAATCCGTAGAAGGCACGAG 121335 Query 33928 CCTCGGTAATCTGCACTTCTGTACA-AAATCGTTCTGCTAAATTTTCATTCACTATTCCA 33986 |||||| | || || || | ||| || || | || ||| || || ||||| Sbjct 121336 CCTCGGAGACTTGAACATC-GGACATGAACCGGGAAGATAGATTCTCCAGAACGATTCCG 121394 Query 33987 TCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTC-TGGTGTTAG 34045 ||| || || || || || | || || || | || | |||||| | || |||| Sbjct 121395 TCAGATGCGGCGAAGAAAGCGAGGACGTGCTTGACGAAGTGCCGTTCGTCGTCGT-TTAG 121453 Query 34046 ---TTTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGA 34102 ||| | ||| || | ||| | ||||| ||| |||||||| | ||||| || || Sbjct 121454 GGCTTTTTCCCAGTCGCGGTAATCCTGAGATAGATCGACTTCTTCGGCGGTCCAGAAAGA 121513 Query 34103 TGCCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGGATTGGGAAAATAACAAA 34162 || || || || || ||||| | |||||| | | |||||||| ||||| ||| || Sbjct 121514 AGCTTCGGCTTTCTTGTACATCTCCCAGATCTGTGGGTATTGGATCGGGAACATACAGAA 121573 Query 34163 TCTATTTGGATTTGG 34177 || || |||| |||| Sbjct 121574 TCGATCTGGACTTGG 121588 >seq2 Length=2373158 Score = 89.7 bits (98), Expect = 6e-13 Identities = 142/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 63422 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 63481 |||||| ||||| | || | ||| || | ||| | || | ||||||||||| |||||| Sbjct 1333101 TCCTCCTTGATCAACATAGCGAGCAGTATCATTGAATACCCGCAACATTGGAACAATACC 1333160 Query 63482 GTTTGATATACCATTGGTACCGGAGATATAGCCTCCACTGGCACGAATATTACTAATTGA 63541 || ||| ||||| || || || || | |||| | ||||| || || |||||| Sbjct 1333161 ATTAGATGCTCCATTTGTGCCACGAATGTAACTTCCAGTTGCACGGATGTTGTGAATTGA 1333220 Query 63542 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGAT 63601 | || || ||||| ||| ||| ||| | || ||| ||| || || ||||| || Sbjct 1333221 AACGCCAATACCCCCAGCCGATTTGCTGATAACAGCACATTCTTTCAATGTATCATATAT 1333280 Query 63602 GCCTTCTATGCTATCATCGATCAT 63625 || || ||||||||||| |||| Sbjct 1333281 TCCCTCGATGCTATCATCCTTCAT 1333304 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629764317431040