Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thlaspi_20arvense_20[genbank_20GCA_5F000956625.1_202015-03-19] 6,768 sequences; 343,012,389 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq146 120 4e-22 seq2 116 5e-21 >seq146 Length=264749 Score = 120 bits (132), Expect = 4e-22 Identities = 405/614 (66%), Gaps = 25/614 (4%) Strand=Plus/Plus Query 36152 ATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAAC 36211 |||||||| |||||||||||||| || || ||||||| || ||||||||||| || Sbjct 120984 ATCAAACAAGCGAAATCGCAGTGAAGGCCTTCGTCTCGCGAGATCAATTCGTTGGAGAAA 121043 Query 36212 GTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGAT-CCAGA 36270 ||||| || ||||||| || || || || ||||| || || || ||| | | | || || Sbjct 121044 GTGAGCCCAGGCATTAAACCTCGTTTCTTCAGCCAGAAAATCGA-GCAGAAGCTACCGGA 121102 Query 36271 AAAGAAAATTCCTTCTACTGCCGC-AAAGGCA--ATAAGTCTCTCTCCATAACCGGCACT 36327 ||||| || ||||| || || |||| || ||| || || | | || || Sbjct 121103 GAAGAAGATACCTTCGACGCAAGCGAAAGCCACGATACGT---TCAGCGAA----GCTCT 121155 Query 36328 GTCAT--GT--ATCCACTTTTGAGCCCAATCG-GCCTTCTTTTTTACACAAGGCATTGTC 36382 | || || ||||| || |||| |||| ||| | || || || || || || Sbjct 121156 GAGATCCGTCGATCCATTTCATCGCCC-ATCGCGCCATTTTCGCGACGCAGGGAATGGTT 121214 Query 36383 TCTATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAA 36442 || || || ||||||| | | | || || | ||||| | || ||||| | | Sbjct 121215 TCGATTGCGCGGAAGAGATGATCTCTCTCTTTGTTGTCTTTGATGTAGGTATCGAGAAGG 121274 Query 36443 AGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTA 36502 ||||| ||||| || || ||||| || || || || || || ||||||||||| | | Sbjct 121275 AGACTGTACATCTCGGAGTGAATATTCTCGATCGCGATCTGGAATCCGTAGAAGGCACGA 121334 Query 36503 GCCTCGGTAATCTGTACTTCTGTACA-AAATCGTTCTGCTAAATTTTCATTCACTATTCC 36561 ||||||| | || || || | ||| || || | || ||| || || ||||| Sbjct 121335 GCCTCGGAGACTTGAACATC-GGACATGAACCGGGAAGATAGATTCTCCAGAACGATTCC 121393 Query 36562 GTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGT-TTGGTGTTA 36620 |||| || || || || || | || || || | || | ||||| | || ||| Sbjct 121394 GTCAGATGCGGCGAAGAAAGCGAGGACGTGCTTGACGAAGTGCCGTTCGTCGTCGT-TTA 121452 Query 36621 G---TTTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATG 36677 | ||| | ||| || | ||| | ||||| ||| |||||||| | ||||| || | Sbjct 121453 GGGCTTTTTCCCAGTCGCGGTAATCCTGAGATAGATCGACTTCTTCGGCGGTCCAGAAAG 121512 Query 36678 ATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATAACAA 36737 | || || || || || ||||| | |||||| | | ||||| || || || ||| | Sbjct 121513 AAGCTTCGGCTTTCTTGTACATCTCCCAGATCTGTGGGTATTGGATCGGGAACATACAGA 121572 Query 36738 ATCTATTTTGATTT 36751 ||| || | || || Sbjct 121573 ATCGATCTGGACTT 121586 >seq2 Length=2373158 Score = 116 bits (128), Expect = 5e-21 Identities = 148/204 (73%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 66215 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 66274 |||||| ||||| | || | ||| || | ||| | || | ||||||||||| |||||| Sbjct 1333101 TCCTCCTTGATCAACATAGCGAGCAGTATCATTGAATACCCGCAACATTGGAACAATACC 1333160 Query 66275 ATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTTGCACGAATATTACTAATTGA 66334 ||| |||| ||||| || || || || |||||| ||||||| || || |||||| Sbjct 1333161 ATTAGATGCTCCATTTGTGCCACGAATGTAACTTCCAGTTGCACGGATGTTGTGAATTGA 1333220 Query 66335 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGAT 66394 | || || ||||| ||| ||| ||| | || ||| ||| || |||||||| || Sbjct 1333221 AACGCCAATACCCCCAGCCGATTTGCTGATAACAGCACATTCTTTCAATGTATCATATAT 1333280 Query 66395 GCCCTCTATACTATCATCCATCAT 66418 ||||| || ||||||||| |||| Sbjct 1333281 TCCCTCGATGCTATCATCCTTCAT 1333304 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658117118581120