Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thlaspi_20arvense_20[genbank_20GCA_5F000956625.1_202015-03-19] 6,768 sequences; 343,012,389 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq252 141 9e-29 seq65 132 5e-26 seq442 129 6e-25 seq5102 109 5e-19 seq49 91.5 1e-13 seq986 82.4 8e-11 >seq252 Length=291119 Score = 141 bits (156), Expect = 9e-29 Identities = 168/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || || | |||||| || ||||||| || ||||| || |||||||| |||||| | Sbjct 178861 CCACCACGCAGACGCAACACCAAGTGAAGAGTCGACTCCTTCTGAATGTTGTAATCGGCC 178920 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | ||||| || |||||||| || ||||| |||| ||||| ||||| || ||||| Sbjct 178921 AATGTGCGACCATCCTCGAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGGTCCGGAGGG 178980 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 |||||||| ||||| ||| || ||| | | || | ||||||| | ||| || Sbjct 178981 ATGCCTTCCTTGTCCTGGATCTTAGCTTTGACGTTATCAATGGTGTCGGAGCTCTCGACT 179040 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 |||| ||| | |||||||||||| || || || ||||| || |||||| Sbjct 179041 TCAAGGGTGATCGTCTTGCCGGTTAAAGTCTTCACGAAAATCTGCATA 179088 Score = 141 bits (156), Expect = 9e-29 Identities = 170/231 (74%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || || | |||||| || ||||||| |||||||| || |||||||| || ||| | Sbjct 179317 CCACCACGGAGACGCAACACCAAGTGAAGTGTAGACTCCTTCTGAATGTTGTAGTCGGCC 179376 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | ||| || ||| || ||||| || || || |||||| | ||||||||| ||||| Sbjct 179377 AATGTTCTGCCGTCCTCAAGCTGCTTTCCGGCGAAGATCAACCTTTGCTGATCCGGAGGA 179436 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 |||||||| ||||| ||| ||| || | | || | ||||| | | ||||||| Sbjct 179437 ATGCCTTCCTTGTCTTGGATCTTTGCCTTCACGTTGTCAATCGTGTCCGAGCTCTCCACC 179496 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATAGCT 139768 || | || | ||||||||||||||| ||||| ||||| || |||||| || Sbjct 179497 TCCAATGTGATCGTCTTGCCGGTCAAGGTTTTAACGAAAATCTGCATACCT 179547 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || || | |||||| || ||||| | || ||||| ||||||||||| |||||| | Sbjct 179089 CCACCACGCAGACGCAACACCAAGTGGAGAGTCGACTCCTTTTGAATGTTGTAATCGGCC 179148 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | ||||| || |||||||| || || || |||| ||||| |||||||| ||||| Sbjct 179149 AATGTGCGACCATCCTCGAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGATCCGGAGGA 179208 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 |||||||| || || || || || | | || | |||||| | | ||||||| Sbjct 179209 ATGCCTTCCTTATCCTGTATCTTGGCCTTGACATTATCGATTGTGTCAGAGCTCTCCACC 179268 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 || | || | ||||||||| || | || || || || || |||||| Sbjct 179269 TCGAGTGTAATCGTCTTGCCAGTGAGTGTCTTCACAAAGATCTGCATA 179316 Score = 102 bits (112), Expect = 8e-17 Identities = 145/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 139562 TGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGT 139621 |||| || ||||| || || || || ||||| || ||| || ||| || ||||| Sbjct 179569 TGAAGAGTCGACTCCTTCTGGATATTGTAATCAGCCAATGTTCTGCCGTCCTCAAGCTGC 179628 Query 139622 TTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTT 139681 || || || |||||| | |||||||| ||||| |||||||| ||||| ||| || Sbjct 179629 TTTCCGGCGAAGATCAACCTCTGCTGATCCGGAGGGATGCCTTCCTTGTCCTGGATCTTG 179688 Query 139682 TGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTC 139741 || | | || | |||||| | | ||| ||||| | ||| | |||||||| ||| Sbjct 179689 GCCTTAACGTTGTCAATTGTGTCCGAGCTCTCAACCTCCAAGGTGATGGTCTTGCCCGTC 179748 Query 139742 AACGTTTTTACGAATATTTGCATA 139765 |||||||| ||||| || |||||| Sbjct 179749 AACGTTTTAACGAAAATCTGCATA 179772 >seq65 Length=625306 Score = 132 bits (146), Expect = 5e-26 Identities = 168/231 (73%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || || | |||||| || ||||||| |||||||| || || ||||| || || | Sbjct 276034 CCACCACGGAGACGCAACACCAAGTGAAGTGTAGACTCCTTCTGGATGTTGTAGTCAGCC 275975 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | ||| || |||||| ||||| || || || ||||||| | |||||||| ||||| Sbjct 275974 AATGTTCTGCCGTCTTCAAGCTGCTTTCCGGCGAAGATCAGCCTCTGCTGATCCGGAGGA 275915 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 |||||||||||||| ||| || || | | || | ||||| | | ||||||| Sbjct 275914 ATGCCTTCTTTGTCCTGGATCTTGGCCTTCACGTTGTCAATGGTGTCCGAGCTCTCCACC 275855 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATAGCT 139768 || | ||| | |||||||| ||||| ||||| ||||| || |||||| || Sbjct 275854 TCCAGGGTAATGGTCTTGCCCGTCAAGGTTTTAACGAAGATCTGCATACCT 275804 Score = 100 bits (110), Expect = 3e-16 Identities = 151/212 (71%), Gaps = 2/212 (1%) Strand=Plus/Minus Query 139555 AACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTC 139614 ||||| |||| || ||||| || |||||||| || || | || | ||| || Sbjct 275789 AACTAGATGAAGAGTCGACTCCTTCTGAATGTTGTAGTCAGCAAGAGTTCGTCCGTCCTC 275730 Query 139615 GAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGT 139674 |||||| || || || |||| ||||| ||||| || ||||| || || ||||| || | Sbjct 275729 GAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAGGGATTCCCTCTTTATCC-T 275671 Query 139675 GATTTTTTGTTTTAGCTGT-TCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCT 139733 || |||| | || | | || | |||||| | | ||||||||| | ||| | ||||| Sbjct 275670 GAATTTTGGCCTTGACGTTATCGATTGTGTCAGAGCTCTCCACCTCGAGGGTGATCGTCT 275611 Query 139734 TGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 | || || | ||||| ||||||||||||||| Sbjct 275610 TTCCCGTTAGGGTTTTGACGAATATTTGCATA 275579 >seq442 Length=166222 Score = 129 bits (142), Expect = 6e-25 Identities = 166/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 ||| || || | |||||| || ||||||| || ||||| || |||||||| |||||| Sbjct 81785 GCCACCACGGAGACGCAACACCAAGTGAAGAGTCGACTCCTTCTGAATGTTGTAATCGGC 81726 Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 || ||||| || |||||||| || ||||| |||| ||||| ||||| || ||||| Sbjct 81725 CAATGTGCGACCATCCTCGAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGGTCCGGAGG 81666 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 || ||||| ||||| ||| || || | | || | |||||| | | ||| || Sbjct 81665 AATACCTTCCTTGTCCTGGATCTTCGCCTTCACGTTGTCGATTGTGTCAGAGCTCTCGAC 81606 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 ||| | ||| | ||||||||||| | || || ||||| ||||||||| Sbjct 81605 CTCCAAGGTGATTGTCTTGCCGGTGAGTGTCTTCACGAAAATTTGCATA 81557 Score = 109 bits (120), Expect = 5e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || || | |||||| || ||||||| |||||||| || || ||||| || || | Sbjct 81328 CCACCACGGAGACGCAAGACCAAGTGAAGTGTAGACTCCTTCTGGATGTTGTAGTCAGCC 81269 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | || | |||||| || || || || || |||||| | |||||||| ||||| Sbjct 81268 AAAGTTCGGCCGTCTTCAAGTTGCTTTCCGGCGAAGATCAATCTCTGCTGATCCGGAGGA 81209 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 || ||||| ||||| |||||| || | | || | ||||||| | |||||| Sbjct 81208 ATACCTTCCTTGTCCTGGATTTTAGCCTTCACGTTGTCAATAGTGTCGGAGCTCTCCACT 81149 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 || | || | ||||| ||||||||||| || ||||| ||||||||| Sbjct 81148 TCCAAAGTGATGGTCTTTCCGGTCAACGTCTTGACGAAGATTTGCATA 81101 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || || | ||| | || ||||||| || ||||| || || ||||| || || | Sbjct 82012 CCACCACGGAGACGAAGGACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCAGCC 81953 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | ||||| || || ||||| || ||||| | || ||||| ||||| || ||||| Sbjct 81952 AATGTGCGACCATCCTCAAGCTGCTTTCCAGCGAAAATGAGACGCTGCTGGTCTGGAGGG 81893 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 || ||||| ||||| ||| || || | | || | ||||| | | ||| || Sbjct 81892 ATACCTTCCTTGTCCTGGATCTTCGCCTTCACGTTGTCAATAGTGTCAGAGCTCTCGACT 81833 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 |||| ||| | ||||||||||| | ||||| |||||||| ||||| Sbjct 81832 TCAAGGGTGATTGTCTTGCCGGTAAGGGTTTTCACGAATATCTGCAT 81786 >seq5102 Length=3010 Score = 109 bits (120), Expect = 5e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || || | ||| | || ||||||| || ||||| || || |||||||| || | Sbjct 2699 CCACCACGAAGACGAAGGACCAAGTGAAGGGTCGACTCCTTCTGGATGTTATAGTCAGCC 2758 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | ||||| || ||||||||||| ||||| |||| ||||| ||||| || ||||| Sbjct 2759 AATGTGCGACCATCCTCGAGCTGTTTTCCAGCGAAGATGAGACGCTGCTGGTCCGGAGGA 2818 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 |||||||| ||||| ||| || || | | || | ||||||| | ||| || Sbjct 2819 ATGCCTTCCTTGTCCTGGATCTTCGCCTTCACGTTGTCAATGGTGTCGGAGCTCTCGACT 2878 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 |||| || | ||||| || ||||| || || ||||| || |||||| Sbjct 2879 TCAAGTGTGATTGTCTTCCCCGTCAAGGTCTTGACGAAAATCTGCATA 2926 >seq49 Length=794425 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 139555 AACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTC 139614 ||| ||||||| || ||||||||||| || || ||||| || || | || || Sbjct 171169 AACCAAGTGAAGGGTTGACTCTTTTTGGATATTGTAATCAGCCAGAGTTCGGCCATCCTC 171228 Query 139615 GAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGT 139674 |||||||||||| ||| |||| || | ||||| |||||||| || |||||||| || Sbjct 171229 GAGCTGTTTACCGGCAAAGATGAGCCTCTGCTGGTCGGGAGGGATTCCTTCTTTATCCTG 171288 Query 139675 GATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTT 139734 ||| || || | | || | ||||| | | || ||||| | ||| | |||||| Sbjct 171289 GATCTTGGCCTTGACGTTGTCGATGGTGTCCGAGCTTTCTACCTCGAGGGTTATCGTCTT 171348 Query 139735 GCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||| || | || || || || || ||||| Sbjct 171349 GCCTGTAAGAGTCTTAACAAAGATCTGCAT 171378 Score = 86.0 bits (94), Expect = 6e-12 Identities = 158/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || |||| ||| | | ||| ||||||| || ||||| ||||| || || ||||| | Sbjct 170924 CCTCCTCTTAACCTAAGAACCAAGTGAAGGGTTGACTCCTTTTGGATATTGTAATCAGCC 170983 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | || | || |||||||||||||| ||| ||||||| | || ||||| ||||| Sbjct 170984 AAAGTACGGCCATCCTCGAGCTGTTTACCGGCAAAGATCAGCCTCTGTTGATCCGGAGGG 171043 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 || |||||||| || ||| | || | || | | || | || || | | ||| || Sbjct 171044 ATTCCTTCTTTATC-CTGAATCTTAGCCTTGACATTGTCGATGGTATCCGAGCTCTCAAC 171102 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 || | ||| | || ||||| || | ||||| || || ||||||||| Sbjct 171103 TTCTAGGGTGATGGTTTTGCCAGTGAGGGTTTTAACAAAAATTTGCATA 171151 >seq986 Length=79754 Score = 82.4 bits (90), Expect = 8e-11 Identities = 151/216 (70%), Gaps = 4/216 (2%) Strand=Plus/Minus Query 139555 AACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATT-GTGCTCGAGTCTT 139613 ||| || || | ||||| || || |||||||| ||||| |||| |||| || | Sbjct 27391 AACAAAATGGAGAGTAGATTCCTTCTGAATGTTGTAATC-CTCAAGAGTGCGACCATCCT 27333 Query 139614 CGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGG 139673 |||||||||||||||| ||||| || | ||||| || || || || ||||| ||||| Sbjct 27332 CGAGCTGTTTACCAGCGTAGATAAGTCTCTGCTGGTCTGGTGGGATCCCTTCCTTGTC-T 27274 Query 139674 TGATTTTTTGT-TTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTC 139732 ||| | || || || | | || | ||||| | || ||||||| ||| | ||| Sbjct 27273 TGAATCTTGGTCTTGACATCGTCAATGGTGTCTAAGCTTTCGACCTCAAGGGTTATGGTC 27214 Query 139733 TTGCCGGTCAACGTTTTTACGAATATTTGCATAGCT 139768 ||||| || | || || || || || |||||| || Sbjct 27213 TTGCCTGTAAGAGTGTTGACAAAGATCTGCATACCT 27178 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496022032985600