Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thlaspi_20arvense_20[genbank_20GCA_5F000956625.1_202015-03-19] 6,768 sequences; 343,012,389 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq69 174 2e-38 seq146 163 4e-35 seq2 111 2e-19 seq874 84.2 3e-11 >seq69 Length=847923 Score = 174 bits (192), Expect = 2e-38 Identities = 413/615 (67%), Gaps = 8/615 (1%) Strand=Plus/Minus Query 49960 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGT 50019 || |||||||||||||||| || ||||||| | || | |||||||| || || ||| Sbjct 357030 CACGCGAAATCGCAGTGCAAGCCTTCGTCTCGAGAGATCAACTCGTTGGAGAAGGTTAGT 356971 Query 50020 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGACCCAGAAAAGAA 50078 || ||||| || || || || || ||||| || || || ||| || || || ||||| Sbjct 356970 CCCGGCATGAGCCCGCGTTTCTTCAGCCAGAAAATCGA-GCAGAAGCTACCGGAGAAGAA 356912 Query 50079 GATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAA--CTGGCGCTGTCATGT 50136 ||| ||||| || ||| ||||| || | | ||| | || |||| | | | | Sbjct 356911 GATGCCTTCGACGCAGGCGAAGGCGACGATACGCTCCGCGAAAGTCTGG-GAT-CCGTCG 356854 Query 50137 ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTA 50196 |||||| | ||||| | |||||||| || ||||| || ||||| || || | Sbjct 356853 ATCCACGTCATCGCCCACTGCGCCTTCTTCGCGACGCAAGGGATGGTTTCGATTGCGCGA 356794 Query 50197 AAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATT 50256 || |||| || | | || || | || || | ||||| |||| | ||||| ||||| Sbjct 356793 AACAGATGGTCTCTCTCCTTGTTGTCCTTGATGTAAGTGTCGAGGAGGAGACTGTACATC 356734 Query 50257 TCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATC 50316 || ||||| ||||| || || || ||||| || ||||||||| | ||||| | | Sbjct 356733 TCGGAATGGATGTTCTCGATCGCGATCTGGAACCCGTAGAAAGCACGCGCCTCCGAGACT 356674 Query 50317 TGCACTTCTGTACA-AAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCACTGGCTGC 50375 || || || | ||| ||||| ||| | ||| || || |||||||| ||| || Sbjct 356673 TGAACATC-GGACATGAATCGAGAAGCGAGATTCTCCAGAACGATTCCGTCTGAGGCGGC 356615 Query 50376 AAAAAACGCCAATACATGTTTTATAAAATGTTTTTCGTTGGGTGTTAGTTTATTCCAATC 50435 || || || | || ||||| || || || ||| | | || || | ||| || Sbjct 356614 GAAGAAGGCGAGGACGTGTTTGATGAAGTGCCGCTCGCCGTCGTTGAGATTCTCCCAGTC 356555 Query 50436 ATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTT 50495 || | ||||| ||| ||||| ||| | |||||||| ||||| || ||||| || Sbjct 356554 GCGACCGTCCTGAGATAGATCGACTTCCTCCGCCGTCCAAAACGATGCTTCGGCCTTCTT 356495 Query 50496 ATACATATTCCAGATGTCATGATATTGGATTGGGAAAATAACAAATCTATTTGGATTTGG 50555 ||||| | |||||| | | || || || ||||| ||| ||||| | ||| |||| Sbjct 356494 GTACATCTCCCAGATCTGTGGGTAGTGAATCGGGAACATACAGAATCTGTCTGGGGTTGG 356435 Query 50556 TGCAAGGATCGGTTC 50570 | ||| | ||| || Sbjct 356434 AGTAAGAAGCGGCTC 356420 >seq146 Length=264749 Score = 163 bits (180), Expect = 4e-35 Identities = 419/627 (67%), Gaps = 17/627 (3%) Strand=Plus/Plus Query 49954 ATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAAC 50013 |||||||| |||||||||||||| || || ||||||| || | ||||||||| || Sbjct 120984 ATCAAACAAGCGAAATCGCAGTGAAGGCCTTCGTCTCGCGAGATCAATTCGTTGGAGAAA 121043 Query 50014 GTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGAC-CCAGA 50072 ||||| || ||||||| || || || || ||||| || || || ||| | | || || Sbjct 121044 GTGAGCCCAGGCATTAAACCTCGTTTCTTCAGCCAGAAAATCGA-GCAGAAGCTACCGGA 121102 Query 50073 AAAGAAGATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGGCGCTGTC 50132 |||||||| ||||| || || || || || | | || | | || ||| Sbjct 121103 GAAGAAGATACCTTCGACGCAAGCGAAAGCCACGATACGTTCAGCGAAGCT----CTGAG 121158 Query 50133 AT--GT--ATCCACTTTTGAGCCCAATCG-GCCTTCTTTTTTACACAAGGCATCGTTTCT 50187 || || ||||| || ||||| ||| ||| | || || || || || ||||| Sbjct 121159 ATCCGTCGATCCATTTCATCGCCCA-TCGCGCCATTTTCGCGACGCAGGGAATGGTTTCG 121217 Query 50188 ATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGA 50247 || || ||||||| | | | || || | ||||| | || ||||||| | ||| Sbjct 121218 ATTGCGCGGAAGAGATGATCTCTCTCTTTGTTGTCTTTGATGTAGGTATCGAGAAGGAGA 121277 Query 50248 CTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCC 50307 || ||||| || || ||||| || || || || ||||| ||||||||||| | |||| Sbjct 121278 CTGTACATCTCGGAGTGAATATTCTCGATCGCGATCTGGAATCCGTAGAAGGCACGAGCC 121337 Query 50308 TCGGTAATCTGCACTTCTGTACA-AAATCGTTCAGCTAAATTTTCATTCACTATTCCGTC 50366 |||| | || || || | ||| || || || || ||| || || |||||||| Sbjct 121338 TCGGAGACTTGAACATC-GGACATGAACCGGGAAGATAGATTCTCCAGAACGATTCCGTC 121396 Query 50367 ACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATGTTTTTCGTTGGGTGTTAG--- 50423 | || || || || || | || || || | || || ||||| | |||| Sbjct 121397 AGATGCGGCGAAGAAAGCGAGGACGTGCTTGACGAAGTGCCGTTCGTCGTCGTTTAGGGC 121456 Query 50424 TTTATTCCAATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGC 50483 ||| | ||| || | ||| | ||||| ||| |||||||| | ||||| || || || Sbjct 121457 TTTTTCCCAGTCGCGGTAATCCTGAGATAGATCGACTTCTTCGGCGGTCCAGAAAGAAGC 121516 Query 50484 CTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGGATTGGGAAAATAACAAATCT 50543 || || || || ||||| | |||||| | | |||||||| ||||| ||| |||| Sbjct 121517 TTCGGCTTTCTTGTACATCTCCCAGATCTGTGGGTATTGGATCGGGAACATACAGAATCG 121576 Query 50544 ATTTGGATTTGGTGCAAGGATCGGTTC 50570 || |||| |||| | || | |||||| Sbjct 121577 ATCTGGACTTGGGGTTAGAAGCGGTTC 121603 >seq2 Length=2373158 Score = 111 bits (122), Expect = 2e-19 Identities = 147/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 80094 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 80153 |||||| ||||| | || | ||| || | ||| | || | ||||||||||| |||||| Sbjct 1333101 TCCTCCTTGATCAACATAGCGAGCAGTATCATTGAATACCCGCAACATTGGAACAATACC 1333160 Query 80154 ATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGA 80213 ||| |||| ||||| || || || || |||||| | ||||| || || |||||| Sbjct 1333161 ATTAGATGCTCCATTTGTGCCACGAATGTAACTTCCAGTTGCACGGATGTTGTGAATTGA 1333220 Query 80214 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGAT 80273 | || || ||||| ||| ||| ||| | || ||| ||| || |||||||| || Sbjct 1333221 AACGCCAATACCCCCAGCCGATTTGCTGATAACAGCACATTCTTTCAATGTATCATATAT 1333280 Query 80274 GCCCTCTATGCTATCATCAATCAT 80297 ||||| ||||||||||| |||| Sbjct 1333281 TCCCTCGATGCTATCATCCTTCAT 1333304 >seq874 Length=86422 Score = 84.2 bits (92), Expect = 3e-11 Identities = 157/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 80085 TCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGG 80144 || |||| |||||| || || | ||| | ||| || | || | || | || ||| || Sbjct 39445 TCTTTTGCCTCCTCCTTGGTCAACGTAACGAGCAGTATCGTTGAATACACGCAGCATCGG 39504 Query 80145 AATAATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATT 80204 || ||||||||| || || || || || || ||| || || ||| | ||||| ||||| Sbjct 39505 AACAATACCATTCGACGTTCCGTTCGTGCCACGGATGTAACTCCCAGTTGCACGGATATT 39564 Query 80205 ACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGT 80264 | || || ||||| || ||||| || ||| |||| || || ||| | || Sbjct 39565 ATGAACCGAAAGACCAATACCCCCAGCAGATTTGCTTATTACAGCACACTCTTTCAGTGT 39624 Query 80265 ATCATAGATGCCCTCTATGCTATCATCAATCATGTTAAGTAGAAAACAGCT 80315 || || || || || ||||||||||| ||||| | ||||| ||||| Sbjct 39625 TTCGTATATACCTTCAATGCTATCATCTTTCATGCAGATCAGAAAGCAGCT 39675 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718208034459520