Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thlaspi_20arvense_20[genbank_20GCA_5F000956625.1_202015-03-19] 6,768 sequences; 343,012,389 total letters Query= NC_004062.1 Length=119217 Score E Sequences producing significant alignments: (Bits) Value seq49 102 6e-17 seq442 91.5 1e-13 seq187 86.0 5e-12 seq65 86.0 5e-12 >seq49 Length=794425 Score = 102 bits (112), Expect = 6e-17 Identities = 142/194 (73%), Gaps = 4/194 (2%) Strand=Plus/Plus Query 42918 CTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAA 42977 ||||||||| | ||||||||| | ||| ||||| | || || | ||||| |||||||| Sbjct 170959 CTCCTTTTGGATATTGTAATCAGCCAAAGTACGGCCATCCTCGAGCTGTTTACCGGCAAA 171018 Query 42978 AATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTGA-TCAACTCTTTGACTC 43036 |||| | ||||||||| | || | |||||||| || |||| || | ||||| Sbjct 171019 GATCAGCCTCTGTTGATCCGGAGGGATTCCTTCTTTATC-CTGAATCTTAGCCTTGACAT 171077 Query 43037 TGCCAACTGTGTCGCCAGC-CTCGACGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTC 43095 || | | || || | ||| ||| || |||| || || ||||| || || || ||||| Sbjct 171078 TGTCGATGGTATC-CGAGCTCTCAACTTCTAGGGTGATGGTTTTGCCAGTGAGGGTTTTA 171136 Query 43096 ACAAAAATTTGCAT 43109 |||||||||||||| Sbjct 171137 ACAAAAATTTGCAT 171150 >seq442 Length=166222 Score = 91.5 bits (100), Expect = 1e-13 Identities = 159/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 42882 GCCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGA 42941 ||| ||||| || | |||||||| || | ||| |||||| || | |||||||||| Sbjct 81785 GCCACCACGGAGACGCAACACCAAGTGAAGAGTCGACTCCTTCTGAATGTTGTAATCGGC 81726 Query 42942 CAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGG 43001 |||||| || | || || | || || || || || || | ||||| || || | || Sbjct 81725 CAATGTGCGACCATCCTCGAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGGTCCGGAGG 81666 Query 43002 CACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGC-CTCGA 43060 | |||||| || || |||| | | || || || | | |||||| ||| ||||| Sbjct 81665 AATACCTTCCTTGTCCTGGATCTTCGCCTTCACGTTGTCGATTGTGTCAG-AGCTCTCGA 81607 Query 43061 CGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 | || | || || || || ||||| || || ||||| ||||||||||| Sbjct 81606 CCTCCAAGGTGATTGTCTTGCCGGTGAGTGTCTTCACGAAAATTTGCAT 81558 >seq187 Length=227058 Score = 86.0 bits (94), Expect = 5e-12 Identities = 136/195 (70%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 42918 CTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAA 42977 |||||| || | ||||| |||| | || ||| |||| || | || || ||||| || Sbjct 169714 CTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGTCCGTCCTCGAGCTGCTTCCCGGCGAA 169773 Query 42978 AATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTGATCAACTCTTTGACTCT 43037 |||||||||||| || || | || | ||||| || || |||| | | ||||| | Sbjct 169774 AATCAATCGCTGCTGGTCCGGAGGGATTCCTTCCTTGTCCTGGATCTTCGCCTTGACATT 169833 Query 43038 GCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCAC 43097 | | | |||||| | |||||| || | || || || || || || || |||||||| Sbjct 169834 GTCGATGGTGTCGGAGGACTCGACCTCAAGGGTGATTGTCTTCCCCGTCAGGGTTTTCAC 169893 Query 43098 AAAAATTTGCATTTT 43112 || || |||||||| Sbjct 169894 GAAGATCTGCATTTT 169908 >seq65 Length=625306 Score = 86.0 bits (94), Expect = 5e-12 Identities = 136/195 (70%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 42918 CTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAA 42977 |||||| || | ||||| |||| | || || |||| |||| ||||| || || || Sbjct 412953 CTCCTTCTGGATGTTGTAGTCGGCGAGCGTGCGGCCGTCTTCCAGCTGTTTCCCCGCGAA 413012 Query 42978 AATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTGATCAACTCTTTGACTCT 43037 |||||||||||| || || | ||| | ||||| || || |||| | ||||||| | Sbjct 413013 AATCAATCGCTGCTGGTCCGGCGGGATTCCTTCCTTGTCTTGGATCTTCGCTTTGACATT 413072 Query 43038 GCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCAC 43097 | | | ||||| | ||||| || | ||||| || || || || || |||||||| Sbjct 413073 GTCGATGGTGTCAGAGGATTCGACCTCAAGGGTTATGGTCTTCCCCGTAAGGGTTTTCAC 413132 Query 43098 AAAAATTTGCATTTT 43112 || || ||||| || Sbjct 413133 GAAGATCTGCATCTT 413147 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 381338142728544