Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thlaspi_20arvense_20[genbank_20GCA_5F000956625.1_202015-03-19] 6,768 sequences; 343,012,389 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq146 159 5e-34 seq2 120 4e-22 >seq146 Length=264749 Score = 159 bits (176), Expect = 5e-34 Identities = 423/631 (67%), Gaps = 25/631 (4%) Strand=Plus/Plus Query 42059 ATCAAACATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAAC 42118 |||||||| |||||||||||||| || || || |||| || ||||||||||| || Sbjct 120984 ATCAAACAAGCGAAATCGCAGTGAAGGCCTTCGTCTCGCGAGATCAATTCGTTGGAGAAA 121043 Query 42119 GTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGAT-CCAGA 42177 ||||| || ||||||| || || || || ||||| || || || ||| | | | || || Sbjct 121044 GTGAGCCCAGGCATTAAACCTCGTTTCTTCAGCCAGAAAATCGA-GCAGAAGCTACCGGA 121102 Query 42178 AAAGAAGATTCCTTCTACTGCCGC-AAAGGCA--ATAAGTCTCTCTCCATAACCGGCACT 42234 |||||||| ||||| || || |||| || ||| || || | | || || Sbjct 121103 GAAGAAGATACCTTCGACGCAAGCGAAAGCCACGATACGT---TCAGCGAA----GCTCT 121155 Query 42235 GTCAT--GT--ATCCACTTTTGAGCCCAATCG-GCCTTCTTTTTTACACAAGGCATCGTT 42289 | || || ||||| || ||||| ||| ||| | || || || || || ||| Sbjct 121156 GAGATCCGTCGATCCATTTCATCGCCCA-TCGCGCCATTTTCGCGACGCAGGGAATGGTT 121214 Query 42290 TCTATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCGATCAAA 42349 || || || ||||||| | | | || || | ||||| | || ||||||| | Sbjct 121215 TCGATTGCGCGGAAGAGATGATCTCTCTCTTTGTTGTCTTTGATGTAGGTATCGAGAAGG 121274 Query 42350 AGACTATACATTTCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTG 42409 ||||| ||||| || || ||||| || || || || ||||| ||||||||||| | Sbjct 121275 AGACTGTACATCTCGGAGTGAATATTCTCGATCGCGATCTGGAATCCGTAGAAGGCACGA 121334 Query 42410 GCCTCGGTAACCTGTACTTCTGTACA-AAATCGTTCAGCTAAATTTTCGTTCACTATTCC 42468 ||||||| || || || || | ||| || || || || ||| || || ||||| Sbjct 121335 GCCTCGGAGACTTGAACATC-GGACATGAACCGGGAAGATAGATTCTCCAGAACGATTCC 121393 Query 42469 GTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCCGGTGTTAA 42528 |||| || || || || || | || || || | || | ||||| || ||| | Sbjct 121394 GTCAGATGCGGCGAAGAAAGCGAGGACGTGCTTGACGAAGTGCCGTTCGT-CGTCGTTTA 121452 Query 42529 ----TTTATTCCAATCATTGATATCTTTAGATATATCTACTTCTTCTACCGTCCAAAATG 42584 ||| | ||| || | ||| | ||||| ||| |||||||| | ||||| || | Sbjct 121453 GGGCTTTTTCCCAGTCGCGGTAATCCTGAGATAGATCGACTTCTTCGGCGGTCCAGAAAG 121512 Query 42585 ATGCTTCTGCCTTTTTATACATATTCCAGATATCATGATATTGAATTGGGAAAATAACAA 42644 | ||||| || || || ||||| | |||||| | | ||||| || ||||| ||| | Sbjct 121513 AAGCTTCGGCTTTCTTGTACATCTCCCAGATCTGTGGGTATTGGATCGGGAACATACAGA 121572 Query 42645 ATCTATTTGGATTTGGTGCAAGGATCGGTTC 42675 ||| || |||| |||| | || | |||||| Sbjct 121573 ATCGATCTGGACTTGGGGTTAGAAGCGGTTC 121603 >seq2 Length=2373158 Score = 120 bits (132), Expect = 4e-22 Identities = 149/204 (73%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 72177 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 72236 |||||| ||||| | || | ||| || | ||| | || | ||||||||||| |||||| Sbjct 1333101 TCCTCCTTGATCAACATAGCGAGCAGTATCATTGAATACCCGCAACATTGGAACAATACC 1333160 Query 72237 ATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTGCTAATTGA 72296 ||| ||||| ||||| || || || || |||||| | ||||| || ||| |||||| Sbjct 1333161 ATTAGATGCTCCATTTGTGCCACGAATGTAACTTCCAGTTGCACGGATGTTGTGAATTGA 1333220 Query 72297 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGAT 72356 | || || ||||| ||| ||| ||| | || ||| ||| || |||||||| || Sbjct 1333221 AACGCCAATACCCCCAGCCGATTTGCTGATAACAGCACATTCTTTCAATGTATCATATAT 1333280 Query 72357 GCCCTCTATACTATCATCCATCAT 72380 ||||| || ||||||||| |||| Sbjct 1333281 TCCCTCGATGCTATCATCCTTCAT 1333304 Score = 84.2 bits (92), Expect = 3e-11 Identities = 90/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 71160 CAATACTCTACGAGTGTAAATATTACTGGTATACGGTTCCACTGACTCATTATTTCCCAA 71219 ||| ||||||||| ||||||| || |||||||||||| | | |||||||| || | Sbjct 1331261 CAAGACTCTACGACTGTAAATGTTTGAGGTATACGGTTCGAAACATTCATTATTCCCAAG 1331320 Query 71220 AATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAGACTATTTCTAAGACCAT 71278 ||| || ||||| ||||| ||||| |||||||| | ||| |||||| | ||||| Sbjct 1331321 AATCTGGCTGGTTGAAGCAGTTGGCATTGGTGCCACTAGAAGAGAATTTCTGATACCAT 1331379 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671082421623680