Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thlaspi_20arvense_20[genbank_20GCA_5F000956625.1_202015-03-19] 6,768 sequences; 343,012,389 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq252 123 3e-23 seq65 111 2e-19 seq442 98.7 1e-15 seq73 86.0 6e-12 seq130 84.2 2e-11 >seq252 Length=291119 Score = 123 bits (136), Expect = 3e-23 Identities = 166/231 (72%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || || || | |||||| || || |||| |||||| || || || |||||||| ||| | Sbjct 179317 CCACCACGGAGACGCAACACCAAGTGAAGTGTAGACTCCTTCTGAATGTTGTAGTCGGCC 179376 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | ||| || ||| || || || || || || |||||| | ||||||||| ||||| Sbjct 179377 AATGTTCTGCCGTCCTCAAGCTGCTTTCCGGCGAAGATCAACCTTTGCTGATCCGGAGGA 179436 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 |||||||| ||||| || ||| || | | || | |||||||| | || || Sbjct 179437 ATGCCTTCCTTGTCTTGGATCTTTGCCTTCACGTTGTCAATCGTGTCCGAGCTCTCCACC 179496 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATAGCT 143188 || | || | ||||||||||||||| ||||| ||||| || |||||| || Sbjct 179497 TCCAATGTGATCGTCTTGCCGGTCAAGGTTTTAACGAAAATCTGCATACCT 179547 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || || || | |||||| || || |||| || || || || || |||||||||||| | Sbjct 178861 CCACCACGCAGACGCAACACCAAGTGAAGAGTCGACTCCTTCTGAATGTTGTAATCGGCC 178920 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | ||||| || ||||| || || ||||| |||| ||||| ||||| || ||||| Sbjct 178921 AATGTGCGACCATCCTCGAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGGTCCGGAGGG 178980 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 |||||||| ||||| || || ||| | | || | ||||| | | || ||| Sbjct 178981 ATGCCTTCCTTGTCCTGGATCTTAGCTTTGACGTTATCAATGGTGTCGGAGCTCTCGACT 179040 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185 |||| || | |||||||||||| || || || ||||| || |||||| Sbjct 179041 TCAAGGGTGATCGTCTTGCCGGTTAAAGTCTTCACGAAAATCTGCATA 179088 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || || || | |||||| || || || | || || || ||||| |||||||||||| | Sbjct 179089 CCACCACGCAGACGCAACACCAAGTGGAGAGTCGACTCCTTTTGAATGTTGTAATCGGCC 179148 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | ||||| || ||||| || || || || |||| ||||| |||||||| ||||| Sbjct 179149 AATGTGCGACCATCCTCGAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGATCCGGAGGA 179208 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 |||||||| || || || || || | | || | ||||| | | || || Sbjct 179209 ATGCCTTCCTTATCCTGTATCTTGGCCTTGACATTATCGATTGTGTCAGAGCTCTCCACC 179268 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185 || | || | ||||||||| || | ||| || || || || |||||| Sbjct 179269 TCGAGTGTAATCGTCTTGCCAGTGAGTGTCTTCACAAAGATCTGCATA 179316 >seq65 Length=625306 Score = 111 bits (122), Expect = 2e-19 Identities = 163/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || || || | |||||| || || |||| |||||| || || || |||||||| || | Sbjct 276034 CCACCACGGAGACGCAACACCAAGTGAAGTGTAGACTCCTTCTGGATGTTGTAGTCAGCC 275975 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | ||| || |||||| || || || || || ||||||| | |||||||| ||||| Sbjct 275974 AATGTTCTGCCGTCTTCAAGCTGCTTTCCGGCGAAGATCAGCCTCTGCTGATCCGGAGGA 275915 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 |||||||||||||| || || || | | || | ||||||| | || || Sbjct 275914 ATGCCTTCTTTGTCCTGGATCTTGGCCTTCACGTTGTCAATGGTGTCCGAGCTCTCCACC 275855 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATAGCT 143188 || | || | |||||||| ||||| ||||| ||||| || |||||| || Sbjct 275854 TCCAGGGTAATGGTCTTGCCCGTCAAGGTTTTAACGAAGATCTGCATACCT 275804 Score = 111 bits (122), Expect = 2e-19 Identities = 163/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || || || | ||| | ||| ||||||| || || || || || |||||||| ||| | Sbjct 276490 CCACCACGAAGACGGAGAACCAAATGAAGAGTCGACTCCTTCTGGATGTTGTAGTCGGCC 276431 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | ||||| || || || ||||| ||||| |||| ||||| ||||| || ||||| Sbjct 276430 AATGTGCGACCATCCTCAAGCTGTTTCCCAGCGAAGATGAGACGCTGCTGGTCCGGAGGG 276371 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || ||||| ||||| || ||| || | | || | |||||||| | || || Sbjct 276370 ATCCCTTCCTTGTCTTGGATCTTTGCCTTCACGTTATCAATCGTGTCCGAGCTCTCAACC 276311 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATAGCT 143188 || | ||| | ||||| ||||||||||| || ||||| || |||||| || Sbjct 276310 TCCAGAGTGATGGTCTTACCGGTCAATGTCTTCACGAAAATCTGCATACCT 276260 Score = 96.9 bits (106), Expect = 4e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 ||||| || | ||| | ||| || |||| |||||| || || || ||||||||||| | Sbjct 276262 CCTCCACGAAGACGGAGAACCAAGTGAAGTGTAGACTCCTTCTGAATGTTGTAATCCGCC 276203 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | |||| || ||||| || || ||||| |||| ||||| ||||| || ||||| Sbjct 276202 AAGGTGCGACCATCCTCGAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGGTCCGGAGGG 276143 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || || ||||| || ||| || || | | || | ||||| | | || || Sbjct 276142 ATTCCCTCTTTATCCTGAATCTTGGCCTTCACGTTATCGATTGTGTCAGAGCTCTCCACC 276083 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185 || | || | ||||||||| || | ||| || ||||| ||||||||| Sbjct 276082 TCGAGGGTAATCGTCTTGCCAGTGAGTGTCTTCACGAAGATTTGCATA 276035 >seq442 Length=166222 Score = 98.7 bits (108), Expect = 1e-15 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 142957 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 143016 ||| || || | |||||| || || |||| || || || || || |||||||||||| Sbjct 81785 GCCACCACGGAGACGCAACACCAAGTGAAGAGTCGACTCCTTCTGAATGTTGTAATCGGC 81726 Query 143017 CATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 143076 || ||||| || ||||| || || ||||| |||| ||||| ||||| || ||||| Sbjct 81725 CAATGTGCGACCATCCTCGAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGGTCCGGAGG 81666 Query 143077 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTAC 143136 || ||||| ||||| || || || | | || | ||||| | | || || Sbjct 81665 AATACCTTCCTTGTCCTGGATCTTCGCCTTCACGTTGTCGATTGTGTCAGAGCTCTCGAC 81606 Query 143137 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185 || | || | ||||||||||| | ||| || ||||| ||||||||| Sbjct 81605 CTCCAAGGTGATTGTCTTGCCGGTGAGTGTCTTCACGAAAATTTGCATA 81557 >seq73 Length=838620 Score = 86.0 bits (94), Expect = 6e-12 Identities = 93/121 (77%), Gaps = 2/121 (2%) Strand=Plus/Minus Query 142972 CAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGC-TCGAGT 143030 ||| || | ||||| ||||| ||||| || ||||||||||| || ||| | || | | Sbjct 423054 CAAGACCAGATGAAGAGTAGACTCTTTCTGGATGTTGTAATCCGCCAGTGTTCGTCCA-T 422996 Query 143031 CTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGT 143090 | || ||||| || || ||| | ||||| | ||||||||| || ||||| |||||||||| Sbjct 422995 CCTCCAGTTGCTTCCCGGCAAATATCAGCCTTTGCTGATCTGGTGGTATACCTTCTTTGT 422936 Query 143091 C 143091 | Sbjct 422935 C 422935 >seq130 Length=298546 Score = 84.2 bits (92), Expect = 2e-11 Identities = 147/214 (69%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 142969 ACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGA 143028 ||||| || || ||||| || || || || | ||||||||||||| || ||||| Sbjct 143368 ACGCAGTACCAAGTGAATGGTCGAGTCCTTCTTGATGTTGTAATCGCCCAATGTGCGACC 143427 Query 143029 GTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTT 143088 || || || ||||| ||||| ||||||| | ||||| || || || || || ||||| Sbjct 143428 ATCCTCAAGCTGTTTGCCAGCGAAGATCAGCCTCTGCTGGTCCGGCGGAATACCCTCTTT 143487 Query 143089 GTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCAC 143148 || || || || | | || | ||||||| | ||| ||||| | || | Sbjct 143488 ATCCTGGATCTTGGCCTTCACGTTATCGATGGTGTCCGAGTCTTCCACTTCTAAGGTGAT 143547 Query 143149 CGTCTTGCCGGTCAATGTTTTTACGAATATTTGC 143182 ||||| || ||||| || |||||||| || ||| Sbjct 143548 GGTCTTCCCTGTCAAAGTCTTTACGAAAATCTGC 143581 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 506971506581760