Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thlaspi_20arvense_20[genbank_20GCA_5F000956625.1_202015-03-19] 6,768 sequences; 343,012,389 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq69 152 8e-32 seq824 84.2 3e-11 >seq69 Length=847923 Score = 152 bits (168), Expect = 8e-32 Identities = 377/559 (67%), Gaps = 16/559 (3%) Strand=Plus/Plus Query 125019 ATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTG 125078 || ||||| |||||||| ||||| | || || |||||||||| || || |||||||| Sbjct 356480 ATCTGGGAGATGTACAAGAAGGCCGAAGCATCGTTTTGGACGGCGGAGGAAGTCGATCTA 356539 Query 125079 TCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTGAAACTGAGCGAGAGTTTATATCG 125138 || ||||| ||| ||||||| || | | || ||||| | || || Sbjct 356540 TCTCAGGACGGTCGCGACTGGGAGAATC---TCAACGACGGCGAGCGGCACTTCATCAAA 356596 Query 125139 CACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCTGTTGACACGA 125198 ||| | | |||||||| |||| ||| || |||||||| || ||||| | ||| Sbjct 356597 CACGTCCTCGCCTTCTTCGCCGCCTCAGACGGAATCGTTCTGGAGAATCTCGCTTCTCGA 356656 Query 125199 TTC-TCTCAAGAGTTGACCATTC-CAGAGGTGTCGTGCTTT-TACGGATTCCAAATCATG 125255 ||| | || ||| | | || | |||| | |||||||| ||||| ||||| ||| | Sbjct 356657 TTCATGTCCGATGTTCA--AGTCTCGGAGGCG-CGTGCTTTCTACGGGTTCCAGATCGCG 356713 Query 125256 ATTGAGAACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTACATTCGCGATCCG 125315 || |||||| | || || || |||||| | || | |||| ||||| || | Sbjct 356714 ATCGAGAACATCCATTCCGAGATGTACAGTCTCCTCCTCGACACTTACATCAAGGA-CAA 356772 Query 125316 CAACGTAA-ACACATGCTCTTTAACGCAATCGACACGGTGCCGTCTATACGTAAAAAGGC 125374 ||| | | | || || ||| ||||||||| || | || | | || ||||| Sbjct 356773 CAAGGAGAGAGACCATCTGTTTCGCGCAATCGAAACCATCCCTTGCGTCGCGAAGAAGGC 356832 Query 125375 TCAATGGGTGATTCGGTGGATCGATGACGACAAGTCTTCGTACGCCGACAGACTGGTGGC 125434 || |||| ||| ||||||||| | | || ||| ||| || | | || || Sbjct 356833 GCAGTGGGCGATGACGTGGATCGACGGATCCCAGACTTT---CGCGGAGCGTATCGTCGC 356889 Query 125435 ATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAG-TTTTGCGGCCATCTTTTGGCTCA 125493 |||||| ||| || ||||||||||| || ||||| || ||| | || || ||||| | Sbjct 356890 CTTCGCCTGCGTCGAAGGCATCTTCTTCTCCGGTAGCTTCTGC-TCGATTTTCTGGCTGA 356948 Query 125494 AGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGACGAGG 125553 |||| ||||| |||||||| ||||| || | |||||||| || ||||||||||| | Sbjct 356949 AGAAACGCGGGCTCATGCCGGGACTAACCTTCTCCAACGAGTTGATCTCTCGAGACGAAG 357008 Query 125554 GCCTACACTGTGACTTTGC 125572 || | ||||| || || || Sbjct 357009 GCTTGCACTGCGATTTCGC 357027 >seq824 Length=166442 Score = 84.2 bits (92), Expect = 3e-11 Identities = 72/89 (81%), Gaps = 0/89 (0%) Strand=Plus/Minus Query 125484 TTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCT 125543 || ||||| ||||| |||||||||||||| |||||| | | |||||||| |||||| Sbjct 134280 TTCTGGCTGAAGAAACGCGGACTCATGCCAGGACTGGCCTTCTCCAACGAGTTAATATCT 134221 Query 125544 CGAGACGAGGGCCTACACTGTGACTTTGC 125572 |||||||| ||||| ||||| || || || Sbjct 134220 CGAGACGAAGGCCTTCACTGCGATTTCGC 134192 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 740996506391680