Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thlaspi_20arvense_20[genbank_20GCA_5F000956625.1_202015-03-19] 6,768 sequences; 343,012,389 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq49 104 2e-17 seq986 93.3 3e-14 seq130 86.0 5e-12 >seq49 Length=794425 Score = 104 bits (114), Expect = 2e-17 Identities = 162/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 |||||||||| | | || ||||| | ||| || ||||| |||||||||||||| Sbjct 170240 CCACCTCTCAGACGGAGCACCAAATGCAAGGTTGATTCTTTCTGTATGTTGTAATCTGCA 170299 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 || ||| | || |||| |||||||||||| |||| | | || ||||| || Sbjct 170300 AGCGTTCGACCATCCTCTAGCTGTTTGCCAGCGAATATGAGTCTCTGCTGGTCCGGAGGG 170359 Query 15257 ATTCCTTCTTTGTCACAAAT-TTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTAC 15315 || ||||| ||||| ||| ||||| ||| ||| | || || || || |||| || Sbjct 170360 ATCCCTTCCTTGTCTTGAATCTTTGC-CTTGACATTGTCAATAGTGTCCGAGCTTTCAAC 170418 Query 15316 ATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 || || || |||||||| ||||| ||||| || || || || |||||| Sbjct 170419 TTCCAATGTTATGGTTTTGCCTGTAAGAGTCTTGACGAAGATCTGCATA 170467 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 ||||||||||| || | ||| || |||||||| || |||||||| || |||||||| Sbjct 171152 CCACCTCTCAACCTAAGAACCAAGTGAAGGGTTGACTCTTTTTGGATATTGTAATCAGCC 171211 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 ||| ||| | || || | ||||| || || | || | | || |||||| || Sbjct 171212 AGAGTTCGGCCATCCTCGAGCTGTTTACCGGCAAAGATGAGCCTCTGCTGGTCGGGAGGG 171271 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316 ||||||||||| || || ||| ||| || | || ||||| || ||||||| Sbjct 171272 ATTCCTTCTTTATCCTGGATCTTGGCCTTGACGTTGTCGATGGTGTCCGAGCTTTCTACC 171331 Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || | ||| || || || ||||| ||||| || ||||| || ||||| Sbjct 171332 TCGAGGGTTATCGTCTTGCCTGTAAGAGTCTTAACAAAGATCTGCAT 171378 Score = 100 bits (110), Expect = 2e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 || ||||| || || | ||| || |||||||| || || ||||| || |||||||| Sbjct 170924 CCTCCTCTTAACCTAAGAACCAAGTGAAGGGTTGACTCCTTTTGGATATTGTAATCAGCC 170983 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 | | | | | || || | ||||| || || | |||| | ||||| || || Sbjct 170984 AAAGTACGGCCATCCTCGAGCTGTTTACCGGCAAAGATCAGCCTCTGTTGATCCGGAGGG 171043 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316 ||||||||||| || ||| || ||| ||| | || |||||||| | || || Sbjct 171044 ATTCCTTCTTTATCCTGAATCTTAGCCTTGACATTGTCGATGGTATCCGAGCTCTCAACT 171103 Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 |||| ||| |||||||| || || || ||||| ||||||||||||||| Sbjct 171104 TCTAGGGTGATGGTTTTGCCAGTGAGGGTTTTAACAAAAATTTGCATA 171151 >seq986 Length=79754 Score = 93.3 bits (102), Expect = 3e-14 Identities = 147/211 (70%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 15154 AACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTC 15213 ||| ||||| || || || || || || ||||||||||| ||| | | | || || Sbjct 27391 AACAAAATGGAGAGTAGATTCCTTCTGAATGTTGTAATCCTCAAGAGTGCGACCATCCTC 27332 Query 15214 TAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACA 15273 | ||||| |||||||| || | | || ||||| ||| || ||||| ||||| Sbjct 27331 GAGCTGTTTACCAGCGTAGATAAGTCTCTGCTGGTCTGGTGGGATCCCTTCCTTGTCTTG 27272 Query 15274 AATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTT 15333 ||| ||| |||| ||| || ||||| || |||| || || | ||| ||||| || Sbjct 27271 AATCTTGGTCTTGACATCGTCAATGGTGTCTAAGCTTTCGACCTCAAGGGTTATGGTCTT 27212 Query 15334 ACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 ||||| ||||| || ||||| || |||||| Sbjct 27211 GCCTGTAAGAGTGTTGACAAAGATCTGCATA 27181 >seq130 Length=298546 Score = 86.0 bits (94), Expect = 5e-12 Identities = 143/207 (69%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214 || || |||| ||| || || || | ||||||||||||| | | | | || || Sbjct 143375 ACCAAGTGAATGGTCGAGTCCTTCTTGATGTTGTAATCGCCCAATGTGCGACCATCCTCA 143434 Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274 | |||||||||||| | |||| | || ||||| ||||| || ||||| || Sbjct 143435 AGCTGTTTGCCAGCGAAGATCAGCCTCTGCTGGTCCGGCGGAATACCCTCTTTATCCTGG 143494 Query 15275 ATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTA 15334 || ||| ||| || | || ||||| || | ||| || |||||||| ||||| || Sbjct 143495 ATCTTGGCCTTCACGTTATCGATGGTGTCCGAGTCTTCCACTTCTAAGGTGATGGTCTTC 143554 Query 15335 CCTGTCAGAGTTTTTACAAAAATTTGC 15361 ||||||| ||| ||||| ||||| ||| Sbjct 143555 CCTGTCAAAGTCTTTACGAAAATCTGC 143581 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 362149325648688