Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thlaspi_20arvense_20[genbank_20GCA_5F000956625.1_202015-03-19] 6,768 sequences; 343,012,389 total letters Query= NC_004778.3 Length=129593 Score E Sequences producing significant alignments: (Bits) Value seq49 116 3e-21 seq65 93.3 4e-14 seq252 89.7 4e-13 >seq49 Length=794425 Score = 116 bits (128), Expect = 3e-21 Identities = 164/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 18815 CCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCC 18874 ||||||| ||||| | |||| ||| | || ||||||||||| ||||||||||| ||| Sbjct 170924 CCTCCTCTTAACCTAAGAACCAAGTGAAGGGTTGACTCCTTTTGGATATTGTAATCAGCC 170983 Query 18875 ATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGC 18934 | || | | ||||| ||||||||||| ||| | || || ||||| |||||| || Sbjct 170984 AAAGTACGGCCATCCTCGAGCTGTTTACCGGCAAAGATCAGCCTCTGTTGATCCGGAGGG 171043 Query 18935 ACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAG-GCTCCGT 18993 | || ||||| || ||| || || || | | ||| ||||| | || ||| Sbjct 171044 ATTCCTTCTTTATCCTGAATCTTAGCCTTGACATTGTCGATGGTATC-CGAGCTCTCAAC 171102 Query 18994 TTCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 ||| | ||| |||||||| || || | ||||| |||||||||||||| Sbjct 171103 TTCTAGGGTGATGGTTTTGCCAGTGAGGGTTTTAACAAAAATTTGCAT 171150 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 18815 CCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCC 18874 ||||||| |||||| | |||| ||||| || || || || || ||||||||||| || Sbjct 170696 CCTCCTCTCAACCTAAGAACCAAGTGCAGGGTTGATTCTTTCTGGATATTGTAATCTGCA 170755 Query 18875 ATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGC 18934 | ||| | | || || ||||| || || || | ||||| |||||||| ||| || Sbjct 170756 AGAGTTCGGCCATCTTCAAGCTGCTTGCCTGCGAAGATAAGCCTCTGCTGGTCCGGAGGA 170815 Query 18935 ACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAG-GCTCCGT 18993 | || || ||||| ||| || || || | | ||| ||| || | || ||| Sbjct 170816 ATCCCTTCCTTGTCCTGAATCTTTGCCTTGACATTGTCGATAGTGTC-CGAGCTCTCAAC 170874 Query 18994 TTCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 ||| | ||| |||||||| ||||| | ||||| ||||| || ||||| Sbjct 170875 TTCTAGGGTGATGGTTTTGCCTGTAAGGGTTTTAACAAAGATCTGCAT 170922 Score = 87.8 bits (96), Expect = 1e-12 Identities = 87/113 (77%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 18815 CCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCC 18874 || |||| |||||| | |||| ||| | || ||||| ||||| ||||||||||| ||| Sbjct 171152 CCACCTCTCAACCTAAGAACCAAGTGAAGGGTTGACTCTTTTTGGATATTGTAATCAGCC 171211 Query 18875 ATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATC 18927 | ||| | | ||||| ||||||||||| ||| | || || |||||||| || Sbjct 171212 AGAGTTCGGCCATCCTCGAGCTGTTTACCGGCAAAGATGAGCCTCTGCTGGTC 171264 Score = 86.0 bits (94), Expect = 5e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 18830 AACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCC 18889 ||||| | ||| | ||| |||||||| || || |||||||| || | || | ||| Sbjct 170027 AACACAAGGTGAAGCGTTGACTCCTTCTGTATGTTGTAATCAGCAAGAGTGCGACCATCC 170086 Query 18890 TCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCG 18949 || |||||||| || || | || |||||||| |||||| || | || || ||||| Sbjct 170087 TCTAGCTGTTTGCCGGCGAAGATGAGTCTCTGTTGATCCGGAGGGATTCCTTCCTTGTCT 170146 Query 18950 GCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTT 19009 ||| ||| ||| || | | ||| || || |||| ||| | || |||||| Sbjct 170147 TGAATCTTCGCTTTAACATTGTCGATTGTGTCTGAGCTCTCCACTTCCAATGTTATGGTT 170206 Query 19010 TTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 ||||| || | || |||||||| || ||||| Sbjct 170207 TTACCGGTAAGGGTCTTGACAAATATCTGCAT 170238 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 18815 CCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCC 18874 ||||||| |||||| | |||| ||||| || ||||| || || ||||||||||| || Sbjct 170468 CCTCCTCTCAACCTAAGAACCAAGTGCAGGGTTGACTCTTTCTGGATATTGTAATCAGCG 170527 Query 18875 ATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGC 18934 | || | | || || |||||||| || || | || |||||||| || ||| || Sbjct 170528 AGAGTGCGGCCATCTTCAAGCTGTTTGCCTGCGAAGATGAGTCTCTGTTGGTCCGGAGGG 170587 Query 18935 ACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTT 18994 | || || ||||| ||| || ||| || | | ||| || || ||| | Sbjct 170588 ATCCCTTCCTTGTCTTGAATCTTAGCTTTAACATTGTCGATTGTGTCTGAGCTCTCAACT 170647 Query 18995 TCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 || | ||| |||||||| || || | |||||||| || || ||||| Sbjct 170648 TCTAGGGTGATGGTTTTGCCAGTGAGGGTTTTGACGAAGATCTGCAT 170694 >seq65 Length=625306 Score = 93.3 bits (102), Expect = 4e-14 Identities = 150/213 (70%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 18830 AACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCC 18889 ||||||| ||| | ||||||||||| || || ||||| || |||| |||| || |||| Sbjct 276019 AACACCAAGTGAAGTGTAGACTCCTTCTGGATGTTGTAGTCAGCCAATGTTCTGCCGTCT 275960 Query 18890 TCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCG 18949 || ||||| || || || | || || |||||||||||| || | ||| |||||||| Sbjct 275959 TCAAGCTGCTTTCCGGCGAAGATCAGCCTCTGCTGATCCGGAGGAATGCCTTCTTTGTCC 275900 Query 18950 GCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAG-GCTCCGTTTCGACGGTAATGGT 19008 || || || || | | | | || || | || |||| || | ||||||||| Sbjct 275899 TGGATCTTGGCCTTCACGTTGTCAATGGTGTC-CGAGCTCTCCACCTCCAGGGTAATGGT 275841 Query 19009 TTTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 || || || || ||||| || || || ||||| Sbjct 275840 CTTGCCCGTCAAGGTTTTAACGAAGATCTGCAT 275808 >seq252 Length=291119 Score = 89.7 bits (98), Expect = 4e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 18815 CCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCC 18874 ||||| || | ||| | ||||| || | || |||||||| || ||||||||||| ||| Sbjct 179545 CCTCCACGAAGCCTGAGCACCAGATGAAGAGTCGACTCCTTCTGGATATTGTAATCAGCC 179604 Query 18875 ATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGC 18934 | |||| || ||||||| ||||| || || || | || | |||||||||||| || Sbjct 179605 AATGTTCTGCCGTCCTCAAGCTGCTTTCCGGCGAAGATCAACCTCTGCTGATCCGGAGGG 179664 Query 18935 ACGCCCTCTTTGTC 18948 | ||| || ||||| Sbjct 179665 ATGCCTTCCTTGTC 179678 Score = 84.2 bits (92), Expect = 2e-11 Identities = 90/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 18830 AACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCC 18889 ||||||| ||| | ||||||||||| ||||| ||||| || |||| |||| || ||||| Sbjct 179332 AACACCAAGTGAAGTGTAGACTCCTTCTGAATGTTGTAGTCGGCCAATGTTCTGCCGTCC 179391 Query 18890 TCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTC 18948 || ||||| || || || | || | || ||||||||| || | ||| || ||||| Sbjct 179392 TCAAGCTGCTTTCCGGCGAAGATCAACCTTTGCTGATCCGGAGGAATGCCTTCCTTGTC 179450 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414538603962592