Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thlaspi_20arvense_20[genbank_20GCA_5F000956625.1_202015-03-19] 6,768 sequences; 343,012,389 total letters Query= NC_005038.1 Length=99657 Score E Sequences producing significant alignments: (Bits) Value seq252 86.0 4e-12 seq49 86.0 4e-12 >seq252 Length=291119 Score = 86.0 bits (94), Expect = 4e-12 Identities = 148/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 33155 CGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGG 33214 ||||||||||| || | |||||||| || || || |||||||| | ||| || | Sbjct 178873 CGCAACACCAAGTGAAGAGTCGACTCCTTCTGAATGTTGTAATCGGCCAATGTGCGACCA 178932 Query 33215 TCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTT 33274 || || | ||||||||| || || | ||| |||||||||| || |||||||| || Sbjct 178933 TCCTCGAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGGTCCGGAGGGATGCCTTCCTTG 178992 Query 33275 TCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATC 33334 || ||| ||| || | | ||| |||||| | | || || || || ||| Sbjct 178993 TCCTGGATCTTAGCTTTGACGTTATCAATGGTGTCGGAGCTCTCGACTTCAAGGGTGATC 179052 Query 33335 GTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 || || || || | ||| || |||||||| ||||| Sbjct 179053 GTCTTGCCGGTTAAAGTCTTCACGAAAATCTGCAT 179087 >seq49 Length=794425 Score = 86.0 bits (94), Expect = 4e-12 Identities = 162/235 (69%), Gaps = 14/235 (6%) Strand=Plus/Plus Query 33142 ACCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGA 33201 ||| ||||| | || | |||||||||||| || || ||||| ||||| |||||||| | Sbjct 170239 ACCACCTCTCAGACGGAGCACCAAATGCAAGGTTGATTCTTTCTGTATGTTGTAATCTG- 170297 Query 33202 CAAATTGAGTTGG----TCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCG 33257 ||| | ||| | || || | || || ||| ||||| | | |||||||||| Sbjct 170298 CAA---GCGTTCGACCATCCTCTAGCTGTTTGCCAGCGAATATGAGTCTCTGCTGGTCCG 170354 Query 33258 TGGGTATGCCTTCTTTTTCGCTAATC---GCCTGTTTTACTGTTTGAATCGTGTCGTTGG 33314 || || ||||| || || |||| ||| || || | | ||| ||||| | Sbjct 170355 GAGGGATCCCTTCCTTGTCTTGAATCTTTGCC---TTGACATTGTCAATAGTGTCCGAGC 170411 Query 33315 GTTGAACGTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 || ||| |||| ||||| ||||| || |||||||| || ||||| || ||||| Sbjct 170412 TTTCAACTTCCAATGTTATGGTTTTGCCTGTAAGAGTCTTGACGAAGATCTGCAT 170466 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 318751305629664