Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thlaspi_20arvense_20[genbank_20GCA_5F000956625.1_202015-03-19] 6,768 sequences; 343,012,389 total letters Query= NC_005137.2 Length=131160 Score E Sequences producing significant alignments: (Bits) Value seq49 93.3 4e-14 seq65 91.5 1e-13 seq442 86.0 5e-12 seq466 84.2 2e-11 seq73 84.2 2e-11 >seq49 Length=794425 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 19982 CCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCC 20041 ||||||| |||||| | ||||| || || || || || ||||| || |||||||| || Sbjct 170924 CCTCCTCTTAACCTAAGAACCAAGTGAAGGGTTGACTCCTTTTGGATATTGTAATCAGCC 170983 Query 20042 ATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGC 20101 | ||| ||| || | ||||| || ||| | || |||||||||||||| || Sbjct 170984 AAAGTACGGCCATCCTCGAGCTGTTTACCGGCAAAGATCAGCCTCTGTTGATCCGGAGGG 171043 Query 20102 ACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGT-TCCGT 20160 | |||||||| || ||| || || || | | | | | ||| | || | || Sbjct 171044 ATTCCTTCTTTATCCTGAATCTTAGCCTTGACATTGTCGATGGTATC-CGAGCTCTCAAC 171102 Query 20161 TTCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCAT 20208 ||| | ||| ||||||||||| || | ||||| |||||||||||||| Sbjct 171103 TTCTAGGGTGATGGTTTTGCCAGTGAGGGTTTTAACAAAAATTTGCAT 171150 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 19982 CCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCC 20041 ||||||| ||||| | ||||| || || || |||||||| || || |||||||| | Sbjct 170696 CCTCCTCTCAACCTAAGAACCAAGTGCAGGGTTGATTCTTTCTGGATATTGTAATCTGCA 170755 Query 20042 ATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGC 20101 | |||| |||||| | || ||||| || | ||||||||||| || || || Sbjct 170756 AGAGTTCGGCCATCTTCAAGCTGCTTGCCTGCGAAGATAAGCCTCTGCTGGTCCGGAGGA 170815 Query 20102 ACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGT-TCCGT 20160 | ||||| ||||| ||| ||| || || | | | | || || | || | || Sbjct 170816 ATCCCTTCCTTGTCCTGAATCTTTGCCTTGACATTGTCGATAGTGTC-CGAGCTCTCAAC 170874 Query 20161 TTCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCAT 20208 ||| | ||| ||||||||||| || | ||||| ||||| || ||||| Sbjct 170875 TTCTAGGGTGATGGTTTTGCCTGTAAGGGTTTTAACAAAGATCTGCAT 170922 >seq65 Length=625306 Score = 91.5 bits (100), Expect = 1e-13 Identities = 150/214 (70%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 19996 CAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATC 20055 ||||||||| || |||||||| || || || |||||||| || ||| ||| | || Sbjct 276020 CAACACCAAGTGAAGTGTAGACTCCTTCTGGATGTTGTAGTCAGCCAATGTTCTGCCGTC 275961 Query 20056 TTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTC 20115 ||| | || || || || | || |||||||| ||||| || | |||||||||||| Sbjct 275960 TTCAAGCTGCTTTCCGGCGAAGATCAGCCTCTGCTGATCCGGAGGAATGCCTTCTTTGTC 275901 Query 20116 GGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGT-TCCGTTTCCACGGTAATGG 20174 || || ||||| | | ||| | || | || | ||| |||| |||||||| Sbjct 275900 CTGGATCTTGGCCTTCACGTTGTCAATGGTGTC-CGAGCTCTCCACCTCCAGGGTAATGG 275842 Query 20175 TTTTGCCGGTCAACGTTTTGACAAAAATTTGCAT 20208 | ||||| ||||| ||||| || || || ||||| Sbjct 275841 TCTTGCCCGTCAAGGTTTTAACGAAGATCTGCAT 275808 >seq442 Length=166222 Score = 86.0 bits (94), Expect = 5e-12 Identities = 149/214 (70%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 19996 CAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATC 20055 ||| ||||| || |||||||| || || || |||||||| || ||| |||| || Sbjct 81314 CAAGACCAAGTGAAGTGTAGACTCCTTCTGGATGTTGTAGTCAGCCAAAGTTCGGCCGTC 81255 Query 20056 TTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTC 20115 ||| | ||| || || || | || | ||||| ||||| || | ||||| ||||| Sbjct 81254 TTCAAGTTGCTTTCCGGCGAAGATCAATCTCTGCTGATCCGGAGGAATACCTTCCTTGTC 81195 Query 20116 GGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGT-TCCGTTTCCACGGTAATGG 20174 ||||| ||||| | | ||| || ||| || | ||| ||||| || |||| Sbjct 81194 CTGGATTTTAGCCTTCACGTTGTCAATAGTGTCGG-AGCTCTCCACTTCCAAAGTGATGG 81136 Query 20175 TTTTGCCGGTCAACGTTTTGACAAAAATTTGCAT 20208 | || ||||||||||| ||||| || |||||||| Sbjct 81135 TCTTTCCGGTCAACGTCTTGACGAAGATTTGCAT 81102 >seq466 Length=125450 Score = 84.2 bits (92), Expect = 2e-11 Identities = 107/146 (73%), Gaps = 1/146 (1%) Strand=Plus/Plus Query 19971 TTTATCATT-TTCCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATG 20029 |||||||| |||| |||| | |||||| ||||| || || || || ||||| || ||| Sbjct 78520 TTTATCATGGTTCCACCTCTGAGCCTCAAGACCAAGTGAAGAGTCGACTCTTTCTGGATG 78579 Query 20030 TTGTAATCGCCCATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGT 20089 |||||||| ||| || | |||||| | |||||| || ||| | || || |||||| Sbjct 78580 TTGTAATCCGCCAGCGTCCGACCATCTTCTAGTTGTTTCCCAGCAAATATCAGTCTCTGT 78639 Query 20090 TGATCGACGGGCACGCCTTCTTTGTC 20115 ||||| || | || |||||||| Sbjct 78640 TGATCCGGTGGTATCCCCTCTTTGTC 78665 >seq73 Length=838620 Score = 84.2 bits (92), Expect = 2e-11 Identities = 107/146 (73%), Gaps = 1/146 (1%) Strand=Plus/Minus Query 19971 TTTATCATT-TTCCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATG 20029 |||||||| |||| |||| | |||||| |||| ||| || ||||| ||||| || ||| Sbjct 423080 TTTATCATGGTTCCACCTCTGAGCCTCAAGACCAGATGAAGAGTAGACTCTTTCTGGATG 423021 Query 20030 TTGTAATCGCCCATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGT 20089 |||||||| ||| ||| ||| |||| ||| || || ||| | || ||||| || Sbjct 423020 TTGTAATCCGCCAGTGTTCGTCCATCCTCCAGTTGCTTCCCGGCAAATATCAGCCTTTGC 422961 Query 20090 TGATCGACGGGCACGCCTTCTTTGTC 20115 ||||| || | ||||||||||| Sbjct 422960 TGATCTGGTGGTATACCTTCTTTGTC 422935 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419552590349808