Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thlaspi_20arvense_20[genbank_20GCA_5F000956625.1_202015-03-19] 6,768 sequences; 343,012,389 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq220 82.4 7e-11 >seq220 Length=496095 Score = 82.4 bits (90), Expect = 7e-11 Identities = 78/100 (78%), Gaps = 0/100 (0%) Strand=Plus/Plus Query 13150 ACATGCAAAATCACAGTGCAATCCTTCATCTCTACTTATTAGCTCGTTTGAAAATGTTAG 13209 ||| ||||| |||||||| | ||||| ||||| ||| |||||||||||||| || | Sbjct 224830 ACAAGCAAAGTCACAGTGGAGGCCTTCGTCTCTCGATATAAGCTCGTTTGAAAAGGTCAA 224889 Query 13210 ACCCGGCATAAGCCCTCGTTTTTTAATCCAAAATATAGCA 13249 ||| |||||||| |||| || |||| ||| || || ||| Sbjct 224890 ACCGGGCATAAGACCTCTCTTCTTAAGCCAGAAGATGGCA 224929 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430946850416736