Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thlaspi_20arvense_20[genbank_20GCA_5F000956625.1_202015-03-19] 6,768 sequences; 343,012,389 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq252 114 1e-20 seq442 96.9 3e-15 seq70 95.1 1e-14 seq49 91.5 1e-13 seq65 87.8 2e-12 seq69 82.4 6e-11 >seq252 Length=291119 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 48499 ACCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGC 48558 ||| || |||| | ||||| || || || || ||||||||||||||||||||| || Sbjct 179088 ACCACCACGCAGACGCAACACCAAGTGGAGAGTCGACTCCTTTTGAATGTTGTAATCGGC 179147 Query 48559 CAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGG 48618 |||| || | ||||| |||||||| ||| || | || | ||||||||||||| || Sbjct 179148 CAATGTGCGACCATCCTCGAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGATCCGGAGG 179207 Query 48619 CACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGT 48678 | | |||||| ||| || || ||||| | | || || || | |||| Sbjct 179208 AATGCCTTCCTTATCCTGTATCTTGGCCTTGACATTATCGATTGTGTCAGAGCTCTCCAC 179267 Query 48679 CTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 ||||| ||| || || || || ||||| || |||||||| |||||||| Sbjct 179268 CTCGAGTGTAATCGTCTTGCCAGTGAGTGTCTTCACAAAGATCTGCAT 179315 Score = 95.1 bits (104), Expect = 1e-14 Identities = 166/234 (71%), Gaps = 12/234 (5%) Strand=Plus/Plus Query 48499 ACCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGC 48558 ||| || |||| | ||||| || ||||| || |||||| |||||||||||||| || Sbjct 178860 ACCACCACGCAGACGCAACACCAAGTGAAGAGTCGACTCCTTCTGAATGTTGTAATCGGC 178919 Query 48559 CAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGG 48618 |||| || | ||||| |||||||| || || | || | ||||||||| ||| || Sbjct 178920 CAATGTGCGACCATCCTCGAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGGTCCGGAGG 178979 Query 48619 CACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACG----CTATGGTATCGGTAGACT 48674 | | |||||||||| || || ||| | |||| | ||||| |||| || || Sbjct 178980 GATGCCTTCCTTGTCCTGGATCTT-AGCT---TTGACGTTATCAATGGTGTCGG-AG-CT 179033 Query 48675 C-CGTC-TCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 | || | || | || || || || ||||| | ||| ||||| ||||||||||| Sbjct 179034 CTCGACTTCAAGGGTGATCGTCTTGCCGGTTAAAGTCTTCACGAAAATCTGCAT 179087 Score = 93.3 bits (102), Expect = 4e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 48518 ACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCC 48577 || || ||||| || ||||||||| |||||||| ||||||||| || | ||||| Sbjct 178651 ACCAAGTGAAGAGTCGACTCCTTTTGGATGTTGTAGTCAGCCAATGTGCGACCATCCTCA 178710 Query 48578 AGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATA 48637 ||||| || || || | || | ||||||||| ||| || | | ||||||||| Sbjct 178711 AGCTGTTTCCCAGCGAAGATGAGACGCTGCTGGTCCGGAGGGATCCCTTCCTTGTCTTGG 178770 Query 48638 ATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTA 48697 || ||| ||| | | ||||| || | ||| ||| | ||| ||||| ||| Sbjct 178771 ATCTTCGCCTTCACGTTGTCAATGGTGTCCGAGCTCTCAACCTCCAGTGTGATGGTCTTA 178830 Query 48698 CCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 ||||| | || ||||||||||||||||| Sbjct 178831 CCGGTTAAGGTCTTCACAAAAATCTGCAT 178859 Score = 93.3 bits (102), Expect = 4e-14 Identities = 102/136 (75%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 48499 ACCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGC 48558 |||||| || | ||| | ||| | |||||| || |||||| || || ||||||||||| Sbjct 179544 ACCTCCACGAAGCCTGAGCACCAGATGAAGAGTCGACTCCTTCTGGATATTGTAATCAGC 179603 Query 48559 CAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGG 48618 |||| || ||||||| |||||||| ||| || | || || | |||||||||| || Sbjct 179604 CAATGTTCTGCCGTCCTCAAGCTGCTTTCCGGCGAAGATCAACCTCTGCTGATCCGGAGG 179663 Query 48619 CACACTTTCCTTGTCC 48634 | | |||||||||| Sbjct 179664 GATGCCTTCCTTGTCC 179679 Score = 89.7 bits (98), Expect = 4e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 48515 AACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCC 48574 ||||| || |||||||| |||||| ||||||||||| || |||||| || ||||| Sbjct 179332 AACACCAAGTGAAGTGTAGACTCCTTCTGAATGTTGTAGTCGGCCAATGTTCTGCCGTCC 179391 Query 48575 TCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCC 48634 || |||||||| ||| || | || || | ||||||||| || | | ||||||||| Sbjct 179392 TCAAGCTGCTTTCCGGCGAAGATCAACCTTTGCTGATCCGGAGGAATGCCTTCCTTGTCT 179451 Query 48635 ATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTT 48694 || || ||| | | || || || | |||| ||| | ||| || || Sbjct 179452 TGGATCTTTGCCTTCACGTTGTCAATCGTGTCCGAGCTCTCCACCTCCAATGTGATCGTC 179511 Query 48695 TTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 || ||||| | ||||| || ||||||||||| Sbjct 179512 TTGCCGGTCAAGGTTTTAACGAAAATCTGCAT 179543 >seq442 Length=166222 Score = 96.9 bits (106), Expect = 3e-15 Identities = 151/214 (71%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 48515 AACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCC 48574 ||||| || ||||| || |||||| |||||||||||||| |||||| || | ||| Sbjct 81769 AACACCAAGTGAAGAGTCGACTCCTTCTGAATGTTGTAATCGGCCAATGTGCGACCATCC 81710 Query 48575 TCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCC 48634 || |||||||| || || | || | ||||||||| ||| || | || |||||||||| Sbjct 81709 TCGAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGGTCCGGAGGAATACCTTCCTTGTCC 81650 Query 48635 ATAATTTTCTGCTTGA--TAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGG 48692 || ||| ||| | | | || || || || | ||| ||| | || || | Sbjct 81649 TGGATCTTCGCCTTCACGTTGTCG--ATTGTGTCAGAGCTCTCGACCTCCAAGGTGATTG 81592 Query 48693 TTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 | || |||||||| || ||||| ||||| ||||| Sbjct 81591 TCTTGCCGGTGAGTGTCTTCACGAAAATTTGCAT 81558 >seq70 Length=414679 Score = 95.1 bits (104), Expect = 1e-14 Identities = 149/211 (71%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 48518 ACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTC-GTCCTC 48576 || || ||||| || |||||| || |||||||| || || | ||| || ||| || Sbjct 19338 ACCAAGTGAAGCGTCGACTCCTTCTGGATGTTGTAGTCCGCGAGA-GTCCTTCCGTCTTC 19396 Query 48577 CAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCAT 48636 ||||||||| ||| || | || | ||||||||||||| ||| | | |||||||||| Sbjct 19397 CAGCTGCTTCCCGGCGAAGATCAGACGCTGCTGATCCGGCGGGATCCCTTCCTTGTCCTG 19456 Query 48637 AATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTT 48696 || ||| ||| | | | || ||||| | || || ||| | ||||| || || Sbjct 19457 GATCTTCGCCTTCACATTGTCGATCGTATCCGACGATTCAACCTCTAGGGTTATCGTCTT 19516 Query 48697 ACCGGTGAGAGTTTTCACAAAAATCTGCATC 48727 || || || |||||||| || ||||||||| Sbjct 19517 CCCCGTTAGGGTTTTCACGAAGATCTGCATC 19547 >seq49 Length=794425 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 48499 ACCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGC 48558 |||||| | ||||| | || || ||||| || ||||||||| || ||||||||||| Sbjct 170923 ACCTCCTCTTAACCTAAGAACCAAGTGAAGGGTTGACTCCTTTTGGATATTGTAATCAGC 170982 Query 48559 CAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGG 48618 ||| || | ||||| ||||| |||||| | | || | | ||| |||||| || Sbjct 170983 CAAAGTACGGCCATCCTCGAGCTGTTTACCGGCAAAGATCAGCCTCTGTTGATCCGGAGG 171042 Query 48619 CACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGT 48678 | | ||| || ||| ||| || ||||| | | |||||||| | ||| Sbjct 171043 GATTCCTTCTTTATCCTGAATCTTAGCCTTGACATTGTCGATGGTATCCGAGCTCTCAAC 171102 Query 48679 CTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 || | || |||||||| || ||||| ||||| |||||||| ||||| Sbjct 171103 TTCTAGGGTGATGGTTTTGCCAGTGAGGGTTTTAACAAAAATTTGCAT 171150 Score = 86.0 bits (94), Expect = 5e-12 Identities = 152/216 (70%), Gaps = 8/216 (4%) Strand=Plus/Plus Query 48515 AACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCA-ATTGTCGCTCGTC 48573 ||||| | ||||| || |||||| || |||||||||||||| | | || || | || Sbjct 170027 AACACAAGGTGAAGCGTTGACTCCTTCTGTATGTTGTAATCAGCAAGAGTG-CGACCATC 170085 Query 48574 CTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTC 48633 ||| ||||| || ||| || | || | | ||| |||||| || | | ||||||||| Sbjct 170086 CTCTAGCTGTTTGCCGGCGAAGATGAGTCTCTGTTGATCCGGAGGGATTCCTTCCTTGTC 170145 Query 48634 CATAATTTTCTGCTTGA---TAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTAT 48690 ||| ||| |||| | | | || || || || | |||| || | |||||| Sbjct 170146 TTGAATCTTC-GCTTTAACATTGTCG--ATTGTGTCTGAGCTCTCCACTTCCAATGTTAT 170202 Query 48691 GGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 |||||||||||| || || || ||||| |||||||| Sbjct 170203 GGTTTTACCGGTAAGGGTCTTGACAAATATCTGCAT 170238 >seq65 Length=625306 Score = 87.8 bits (96), Expect = 2e-12 Identities = 160/232 (69%), Gaps = 8/232 (3%) Strand=Plus/Minus Query 48499 ACCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGC 48558 |||||| || | ||| | |||| |||||| || |||||| ||||||||||| ||||| Sbjct 275807 ACCTCCACGAAGCCTGAGAACTAGATGAAGAGTCGACTCCTTCTGAATGTTGTAGTCAGC 275748 Query 48559 CAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGG 48618 | ||| ||||||| |||||||| ||| || | || | ||||||||| ||| || Sbjct 275747 AAGAGTTCGTCCGTCCTCGAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAGG 275688 Query 48619 CACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGT-AGA---CT 48674 | | || || ||| |||||| ||| |||| ||| | | || ||| || Sbjct 275687 GATTCCCTCTTTATCCTGAATTTTGGCCTT----GACGTTATCGATTGTGTCAGAGCTCT 275632 Query 48675 CCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 || ||||| || || || || || || || ||||| || || || ||||| Sbjct 275631 CCACCTCGAGGGTGATCGTCTTTCCCGTTAGGGTTTTGACGAATATTTGCAT 275580 >seq69 Length=847923 Score = 82.4 bits (90), Expect = 6e-11 Identities = 170/249 (68%), Gaps = 8/249 (3%) Strand=Plus/Minus Query 48500 CCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCC 48559 ||||| | | ||| | || |||||||| || ||||| || |||||||| || || Sbjct 38661 CCTCCTCTAAGCCTAAGGACCAAATGAAGCGTCGATTCCTTCTGGATGTTGTAGTCGGCG 38602 Query 48560 AATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGC 48619 | | || | || ||||| || || ||| || | || | |||||||||||| ||| Sbjct 38601 AGTGTCCGACCATCTTCCAGTTGTTTTCCGGCGAAGATCAGCCGCTGCTGATCCGGCGGG 38542 Query 48620 ACACTTTCCTTGTCCATAATTTTCTGCTT---GATAGACGCTATGGTATCGGTAGACTCC 48676 | | |||||||||| || || |||| || | || || || || | || || Sbjct 38541 ATGCCTTCCTTGTCCTGGATCTT-AGCTTTCACATTGTCG--ATCGTGTCCGATGATTCA 38485 Query 48677 GTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCATCGTGTCTTGA 48736 ||||| |||||| || || || | ||||| ||||| ||||||||||| | |||| Sbjct 38484 ACCTCGAGTGTTATTGTCTTCCCCGCAAGAGTCTTCACGAAAATCTGCAT--TCTCTTCC 38427 Query 48737 TCGAAGAAA 48745 ||| ||||| Sbjct 38426 TCGGAGAAA 38418 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421216453094768