Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thlaspi_20arvense_20[genbank_20GCA_5F000956625.1_202015-03-19] 6,768 sequences; 343,012,389 total letters Query= NC_005906.1 Length=81755 Score E Sequences producing significant alignments: (Bits) Value seq57 123 1e-23 seq213 118 6e-22 seq109 116 2e-21 seq105 116 2e-21 seq4 116 2e-21 seq299 113 2e-20 seq77 113 2e-20 seq997 111 8e-20 seq245 111 8e-20 seq22 107 1e-18 seq384 98.7 5e-16 seq21 98.7 5e-16 seq78 96.9 2e-15 seq56 95.1 6e-15 seq2698 93.3 2e-14 seq5 93.3 2e-14 >seq57 Length=765321 Score = 123 bits (136), Expect = 1e-23 Identities = 85/97 (88%), Gaps = 0/97 (0%) Strand=Plus/Minus Query 11433 ATAGAATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTT 11492 ||| || || |||||| ||||||||||||| | | |||||||| ||||||||||||| Sbjct 341923 ATAAAAAAAAAAAAAAAAAAAATTGGCCCATGCAGGTTTCGAACCTGCGACCTTCGCGTT 341864 Query 11493 ATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||||||||||| |||||||||||||||||||| Sbjct 341863 ATTAGCACGACGCTCTAACCAACTGAGCTAATGGGCC 341827 >seq213 Length=381744 Score = 118 bits (130), Expect = 6e-22 Identities = 78/86 (91%), Gaps = 2/86 (2%) Strand=Plus/Minus Query 11444 AAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503 ||||||| |||||||||||| | | |||||||| |||||||||||||||||||||||| Sbjct 319903 AAAAAAT--AATTGGCCCATGCAGGTTTCGAACCTGCGACCTTCGCGTTATTAGCACGAC 319846 Query 11504 GCTCTRACCAACTGAGCTAATGGGCC 11529 ||||| |||||||||||||||||||| Sbjct 319845 GCTCTAACCAACTGAGCTAATGGGCC 319820 >seq109 Length=331296 Score = 116 bits (128), Expect = 2e-21 Identities = 81/92 (88%), Gaps = 2/92 (2%) Strand=Plus/Plus Query 11440 TAATAAAAAATCAA--ATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAG 11497 |||||||| | || ||||||||||| | | |||||||| |||||||||||||||||| Sbjct 23909 TAATAAAATTTTAATAATTGGCCCATGCAGGTTTCGAACCTGCGACCTTCGCGTTATTAG 23968 Query 11498 CACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||||||||||| |||||||||||||||||||| Sbjct 23969 CACGACGCTCTAACCAACTGAGCTAATGGGCC 24000 >seq105 Length=321650 Score = 116 bits (128), Expect = 2e-21 Identities = 74/81 (91%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 11450 TCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTR 11509 ||||| ||||||||| | | |||||||| ||||||||||||||||||||||||||||| Sbjct 59815 TCAAAATGGCCCATGCAGGTTTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTA 59756 Query 11510 ACCAACTGAGCTAATGGGCCG 11530 ||||||||||||||||||||| Sbjct 59755 ACCAACTGAGCTAATGGGCCG 59735 >seq4 Length=1478651 Score = 116 bits (128), Expect = 2e-21 Identities = 79/89 (89%), Gaps = 3/89 (3%) Strand=Plus/Plus Query 11441 AATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCAC 11500 |||||||||| | ||||||||| | | |||||||| ||||||||||||||||||||| Sbjct 1471720 AATAAAAAATAA---TGGCCCATGCAGGTTTCGAACCTGCGACCTTCGCGTTATTAGCAC 1471776 Query 11501 GACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||| |||||||||||||||||||| Sbjct 1471777 GACGCTCTAACCAACTGAGCTAATGGGCC 1471805 >seq299 Length=202993 Score = 113 bits (124), Expect = 2e-20 Identities = 70/76 (92%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| | | |||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 144311 TGGCCCATGCAGGTTTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 144252 Query 11516 TGAGCTAATGGGCCGT 11531 |||||||||||||||| Sbjct 144251 TGAGCTAATGGGCCGT 144236 >seq77 Length=396181 Score = 113 bits (124), Expect = 2e-20 Identities = 70/76 (92%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 11454 ATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCA 11513 ||||||||||| | | |||||||| ||||||||||||||||||||||||||||| |||| Sbjct 312293 ATTGGCCCATGCAGGTTTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCA 312352 Query 11514 ACTGAGCTAATGGGCC 11529 |||||||||||||||| Sbjct 312353 ACTGAGCTAATGGGCC 312368 >seq997 Length=73507 Score = 111 bits (122), Expect = 8e-20 Identities = 79/90 (88%), Gaps = 1/90 (1%) Strand=Plus/Minus Query 11441 AATAAAAAATCAAAT-TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCA 11499 || |||| || || | ||||||||| | | |||||||| |||||||||||||||||||| Sbjct 27745 AAAAAAACATAAATTGTGGCCCATGCAGGTTTCGAACCTGCGACCTTCGCGTTATTAGCA 27686 Query 11500 CGACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||||||||| |||||||||||||||||||| Sbjct 27685 CGACGCTCTAACCAACTGAGCTAATGGGCC 27656 Score = 82.4 bits (90), Expect = 4e-11 Identities = 64/77 (83%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 |||| |||| | | || ||||| | |||||||| |||||||| ||| ||||| |||||| Sbjct 43695 TGGCACATGCAGGTTTCAAACCTGCAACCTTCGCCTTATTAGCTCGAGGCTCTAACCAAC 43636 Query 11516 TGAGCTAATGGGCCGTC 11532 |||||||||||||| || Sbjct 43635 TGAGCTAATGGGCCATC 43619 >seq245 Length=192397 Score = 111 bits (122), Expect = 8e-20 Identities = 69/75 (92%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514 |||||||||| | | |||||||| ||||||||||||||||||||||||||||| ||||| Sbjct 117963 TTGGCCCATGCAGGTTTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAA 118022 Query 11515 CTGAGCTAATGGGCC 11529 ||||||||||||||| Sbjct 118023 CTGAGCTAATGGGCC 118037 Score = 95.1 bits (104), Expect = 6e-15 Identities = 79/96 (82%), Gaps = 1/96 (1%) Strand=Plus/Plus Query 11437 AATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTA 11496 ||||| || || | ||| ||||| || | | |||||||| |||||||||||||||| Sbjct 38499 AATTA-TAGAACAAAAAACTGGCCTATACAGGTTTCGAACCTGTGACCTTCGCGTTATTA 38557 Query 11497 GCACGACGCTCTRACCAACTGAGCTAATGGGCCGTC 11532 |||||||||||| ||||||||||||||| |||| || Sbjct 38558 GCACGACGCTCTAACCAACTGAGCTAATAGGCCATC 38593 >seq22 Length=678073 Score = 107 bits (118), Expect = 1e-18 Identities = 75/86 (87%), Gaps = 0/86 (0%) Strand=Plus/Plus Query 11444 AAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503 ||||||| ||||||||| || | | |||||||| ||||||||||||||||||||||| Sbjct 99114 AAAAAATGAAATTGGCCTATACAGGTTTCGAACCTGTGACCTTCGCGTTATTAGCACGAC 99173 Query 11504 GCTCTRACCAACTGAGCTAATGGGCC 11529 ||||| ||||||||||||||| |||| Sbjct 99174 GCTCTAACCAACTGAGCTAATAGGCC 99199 Score = 91.5 bits (100), Expect = 8e-14 Identities = 57/62 (92%), Gaps = 0/62 (0%) Strand=Plus/Plus Query 11471 TCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCCG 11530 |||||||| |||||||||||||||||||||||||||| ||||||||||||||| |||| Sbjct 104096 TCGAACCTGTGACCTTCGCGTTATTAGCACGACGCTCTAACCAACTGAGCTAATAGGCCA 104155 Query 11531 TC 11532 || Sbjct 104156 TC 104157 >seq384 Length=138969 Score = 98.7 bits (108), Expect = 5e-16 Identities = 76/90 (84%), Gaps = 1/90 (1%) Strand=Plus/Plus Query 11441 AATAAAAAATCAA-ATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCA 11499 || |||| || || ||||||| || | | |||||||| ||||||||||||||||||| Sbjct 79586 AAAAAAATATAAACATTGGCCTATACAGGTTTCGAACCTGTGACCTTCGCGTTATTAGCA 79645 Query 11500 CGACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||||||||| ||||||||||||||| |||| Sbjct 79646 CGACGCTCTAACCAACTGAGCTAATAGGCC 79675 >seq21 Length=850468 Score = 98.7 bits (108), Expect = 5e-16 Identities = 73/85 (86%), Gaps = 2/85 (2%) Strand=Plus/Plus Query 11445 AAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACG 11504 ||||||||| ||||| || | | |||||||| |||||||||||||||||||||||| Sbjct 48317 AAAAATCAA--TGGCCTATACAGGTTTCGAACCTGTGACCTTCGCGTTATTAGCACGACG 48374 Query 11505 CTCTRACCAACTGAGCTAATGGGCC 11529 |||| ||||||||||||||| |||| Sbjct 48375 CTCTAACCAACTGAGCTAATAGGCC 48399 Score = 96.9 bits (106), Expect = 2e-15 Identities = 73/87 (84%), Gaps = 0/87 (0%) Strand=Plus/Plus Query 11443 TAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGA 11502 |||||| ||| ||||| || | | |||||||| |||||||||||||||||||||| Sbjct 48169 TAAAAAGATAAAATGGCCTATACAGGTTTCGAACCTGTGACCTTCGCGTTATTAGCACGA 48228 Query 11503 CGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||| ||||||||||||||| |||| Sbjct 48229 CGCTCTAACCAACTGAGCTAATAGGCC 48255 >seq78 Length=520074 Score = 96.9 bits (106), Expect = 2e-15 Identities = 77/92 (84%), Gaps = 1/92 (1%) Strand=Plus/Minus Query 11439 TTAATAAAAAA-TCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAG 11497 || |||| ||| | | | ||||||||| | | || ||| | |||||||||||||||||| Sbjct 10832 TTGATAATAAAGTTAGAATGGCCCATGCAGGTTTCCAACATGCGACCTTCGCGTTATTAG 10773 Query 11498 CACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||||||||||| ||||| |||||||||||||| Sbjct 10772 CACGACGCTCTAACCAATTGAGCTAATGGGCC 10741 >seq56 Length=672149 Score = 95.1 bits (104), Expect = 6e-15 Identities = 76/92 (83%), Gaps = 3/92 (3%) Strand=Plus/Minus Query 11441 AATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCAC 11500 |||| ||||| |||||| || | | |||||||| |||||||||||||||||||| Sbjct 272101 AATATAAAATT---TTGGCCTATACAGGTTTCGAACCTGTGACCTTCGCGTTATTAGCAC 272045 Query 11501 GACGCTCTRACCAACTGAGCTAATGGGCCGTC 11532 |||||||| ||||||||||||||| |||| || Sbjct 272044 GACGCTCTAACCAACTGAGCTAATAGGCCATC 272013 >seq2698 Length=23049 Score = 93.3 bits (102), Expect = 2e-14 Identities = 65/75 (87%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514 |||||| || | | |||||||| |||||||||||||||||||||||||||| ||||| Sbjct 20377 TTGGCCTATACAGGTTTCGAACCTGTGACCTTCGCGTTATTAGCACGACGCTCTAACCAA 20318 Query 11515 CTGAGCTAATGGGCC 11529 |||||||||| |||| Sbjct 20317 CTGAGCTAATAGGCC 20303 >seq5 Length=1505618 Score = 93.3 bits (102), Expect = 2e-14 Identities = 65/75 (87%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514 |||||| || | | |||||||| |||||||||||||||||||||||||||| ||||| Sbjct 542767 TTGGCCTATACAGGTTTCGAACCTGTGACCTTCGCGTTATTAGCACGACGCTCTAACCAA 542826 Query 11515 CTGAGCTAATGGGCC 11529 |||||||||| |||| Sbjct 542827 CTGAGCTAATAGGCC 542841 Lambda K H 0.638 0.410 0.920 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 261469630898368