Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thlaspi_20arvense_20[genbank_20GCA_5F000956625.1_202015-03-19] 6,768 sequences; 343,012,389 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq4169 199 6e-47 seq236 143 4e-30 seq233 127 3e-25 seq97 127 3e-25 seq93 125 1e-24 seq2187 116 6e-22 seq512 111 2e-20 seq121 100 4e-17 >seq4169 Length=6310 Score = 199 bits (220), Expect = 6e-47 Identities = 205/268 (76%), Gaps = 0/268 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||||||||| | || || || |||||||| |||||||||||||| || || Sbjct 2308 CGCCAAGCGTCATCGTAAGGTGCTGCGTGACAACATCCAGGGAATCACCAAGCCCGCCAT 2367 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||||||||||||||| |||||||||||||||||| |||| || | |||| || |||| Sbjct 2368 CCGTCGTCTGGCTCGCCGTGGTGGAGTCAAGCGTATCTCCGGTCTCATCTACGAGGAGAC 2427 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 |||| ||| | ||| | ||||| ||| ||| |||| ||| || || ||| ||||| Sbjct 2428 CCGTGGTGTGCTCAAGGTGTTCCTTGAGAACGTCATCCGTGACGCCGTCACCTACACCGA 2487 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 ||||||||| | ||||| |||||| ||||||| | ||||| || | || ||||| || Sbjct 2488 GCACGCTAAGAGGAAGACCGTCACCGCCATGGACGTGGTCTACGCCCTCAAGCGTCAGGG 2547 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAA 16699 |||| | || ||||| ||| ||||| Sbjct 2548 ACGTACCCTGTACGGTTTCGGAGGTTAA 2575 >seq236 Length=268001 Score = 143 bits (158), Expect = 4e-30 Identities = 150/197 (76%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 16460 GATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTC 16519 |||||||||||||| ||||||||||| || ||||||||||| |||||| | || || ||| Sbjct 195999 GATAACATCCAAGGCATCACCAAGCCTGCGATCCGTCGTCTTGCTCGTAGAGGAGGCGTC 196058 Query 16520 AAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAG 16579 ||||| || ||| || |||| ||||||| | | || | |||||||||||| || Sbjct 196059 AAGCGAATCAGTGGTCTGATCTACGAAGAGACCAGAGGAGTCCTCAAGATCTTCCTCGAG 196118 Query 16580 ACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCC 16639 | ||| |||| || || || ||| ||||||||||| | ||||| || ||| || Sbjct 196119 AACGTCATCCGCGACGCCGTCACCTACACCGAGCACGCCCGGAGGAAGACGGTTACCGCC 196178 Query 16640 ATGGATATCGTCTATGC 16656 |||||| ||||||| || Sbjct 196179 ATGGATGTCGTCTACGC 196195 >seq233 Length=195845 Score = 127 bits (140), Expect = 3e-25 Identities = 154/210 (73%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 16453 TCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGG 16512 ||| ||||| |||||||| || || || ||||| || || || ||||| || | | || Sbjct 69276 TCTCCGAGACAACATCCAGGGGATTACGAAGCCGGCGATTCGCCGTCTAGCGAGAAGAGG 69335 Query 16513 TGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTT 16572 ||| || |||||| | || ||| |||| || || | ||| | |||| | |||||||| Sbjct 69336 TGGCGTGAAGCGTATAAGCGGCTTGATCTACGAGGAAACTCGCGGTGTTCTTAAGATCTT 69395 Query 16573 CCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGT 16632 |||| ||| || || | ||| || || || || ||||||||| || |||||||| Sbjct 69396 CCTCGAGAATGTGATTCGTGACGCCGTCACATACACTGAGCACGCTCGCCGGAAGACTGT 69455 Query 16633 CACCTCCATGGATATCGTCTATGCATTGAA 16662 |||| | |||||| | |||||||| ||||| Sbjct 69456 CACCGCGATGGATGTTGTCTATGCGTTGAA 69485 >seq97 Length=387352 Score = 127 bits (140), Expect = 3e-25 Identities = 154/210 (73%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 16453 TCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGG 16512 ||| ||||| || ||||| || || || ||||| || || || |||||||| | | || Sbjct 322135 TCTCCGAGACAATATCCAGGGGATTACGAAGCCGGCGATTCGCCGTCTGGCGAGGAGAGG 322076 Query 16513 TGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTT 16572 ||| || |||||| | || ||| |||| || |||| ||| | |||| | |||||||| Sbjct 322075 TGGTGTGAAGCGTATAAGCGGCTTGATCTACGAGGAGACTCGCGGTGTTCTTAAGATCTT 322016 Query 16573 CCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGT 16632 |||| ||| || || | ||| || || ||| |||||||||||| | ||||| || Sbjct 322015 CCTCGAGAATGTGATTCGTGACGCCGTCACCTACACCGAGCACGCTCGCAGGAAGACCGT 321956 Query 16633 CACCTCCATGGATATCGTCTATGCATTGAA 16662 ||| | |||||| | |||||||| ||||| Sbjct 321955 CACGGCGATGGATGTTGTCTATGCGTTGAA 321926 >seq93 Length=1005792 Score = 125 bits (138), Expect = 1e-24 Identities = 173/242 (71%), Gaps = 0/242 (0%) Strand=Plus/Minus Query 16458 GAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAG 16517 |||| |||||||| |||||||||||||| || || || | || ||||| | ||||||| Sbjct 59159 GAGACAACATCCAGGGAATCACCAAGCCGGCGATTCGGAGGCTTGCTCGCAGAGGTGGAG 59100 Query 16518 TCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCA 16577 |||||||| || ||| | |||| || |||| |||| ||| | |||||||| | Sbjct 59099 TCAAGCGTATCAGTGGTCTCATCTACGAGGAGACACGTGGTGTCCTCAAGATCTTTTTGG 59040 Query 16578 AGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCT 16637 ||| ||| |||| ||| || || ||| ||||||||||| | | ||||| || || Sbjct 59039 AGAACGTGATCCGTGACGCCGTCACCTACACCGAGCACGCCAGGAGGAAGACGGTGACTG 58980 Query 16638 CCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTT 16697 ||||||| |||| || || | || | ||||| | | | | || ||||| || ||| Sbjct 58979 CCATGGACGTCGTTTACGCGCTCAAGAGGCAAGGAAGGACGCTCTACGGTTTCGGCGGTT 58920 Query 16698 AA 16699 || Sbjct 58919 AA 58918 >seq2187 Length=31643 Score = 116 bits (128), Expect = 6e-22 Identities = 154/214 (72%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 16458 GAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAG 16517 |||| ||||||||||||||||||||||| || || || | |||||||| | || || | Sbjct 10161 GAGACAACATCCAAGGAATCACCAAGCCGGCGATTCGGTGATTGGCTCGTAGAGGAGGCG 10102 Query 16518 TCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCA 16577 |||||||| || || || |||| || |||| |||| ||| | |||||||| | Sbjct 10101 TCAAGCGTATCAGCGGTCTGATCTACGAGGAGACACGTGGTGTCCTCAAGATCTTTTTGG 10042 Query 16578 AGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCT 16637 ||| ||| |||| || || || || ||||||||||| | ||||| || || Sbjct 10041 AGAACGTCATCCGCGACGCCGTCACTTACACCGAGCACGCACGGAGGAAGACGGTGACGG 9982 Query 16638 CCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||||| | || ||||| | ||| | ||||| Sbjct 9981 CCATGGATGTGGTTTATGCTCTCAAAAGGCAAGG 9948 >seq512 Length=120018 Score = 111 bits (122), Expect = 2e-20 Identities = 159/224 (71%), Gaps = 0/224 (0%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||||||||| | | ||| |||| ||||||||||||||||||||||| || || Sbjct 43350 GCAAAGCGTCATAGGAAGGTTCTGAGAGACAACATCCAAGGAATCACCAAGCCGGCGATT 43291 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 || | |||||||| | || || ||||||||| || || || |||| || |||| Sbjct 43290 CGGAGATTGGCTCGTAGAGGAGGCGTCAAGCGTATCAGCGGTCTGATCTACGAGGAGACA 43231 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 |||| || | |||||||| | ||| ||| |||| || || || || |||||| Sbjct 43230 CGTGGCGTCCTCAAGATCTTTTTGGAGAACGTCATCCGCGACGCCGTCACTTACACCGAG 43171 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGC 16656 ||||| | ||||| || || |||||||| | || ||||| Sbjct 43170 CACGCACGGAGGAAGACGGTGACGGCCATGGATGTGGTTTATGC 43127 >seq121 Length=758818 Score = 100 bits (110), Expect = 4e-17 Identities = 163/235 (69%), Gaps = 0/235 (0%) Strand=Plus/Plus Query 16458 GAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAG 16517 |||| || ||||| |||||||| ||||| || ||| | ||||| |||||| | || || | Sbjct 680719 GAGACAATATCCAGGGAATCACGAAGCCTGCGATCAGGCGTCTCGCTCGTAGAGGAGGCG 680778 Query 16518 TCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCA 16577 | ||| | || || ||| |||| || || | | | |||||||||||||| ||| Sbjct 680779 TGAAGAGAATCAGCGGCTTGATCTACGAGGAAACCAGAGGAGTTTTGAAGATCTTTCTCG 680838 Query 16578 AGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCT 16637 ||| |||||| || || | || ||||||||||| | | ||||| || || Sbjct 680839 AGAATGTTATCAGAGACGCCGTGACTTACACCGAGCACGCGAGGAGGAAGACGGTTACTG 680898 Query 16638 CCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGG 16692 | |||||| | || || || ||||| | ||||| || | |||| || || || Sbjct 680899 CAATGGATGTGGTTTACGCTTTGAAGAGGCAAGGACGCACTCTTTACGGATTCGG 680953 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79069011970224