Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thlaspi_20arvense_20[genbank_20GCA_5F000956625.1_202015-03-19] 6,768 sequences; 343,012,389 total letters Query= NC_006820.1 Length=196280 Score E Sequences producing significant alignments: (Bits) Value seq161 618 6e-172 seq352 244 1e-59 seq438 87.8 2e-12 >seq161 Length=278270 Score = 618 bits (684), Expect = 6e-172 Identities = 715/958 (75%), Gaps = 8/958 (1%) Strand=Plus/Minus Query 135374 TTCTGCGAGTGGGTTACCAGCACCGACAACCGCCTCTATGTGGGTTGGTTTGGAACGCTG 135433 ||||| | ||| | |||||||| || ||||| || || | || |||||||| || Sbjct 90965 TTCTGTAACTGGATAACCAGCACTGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTG 90906 Query 135434 ATGATTCCTACTCTTCTCG-CAGCTGCTATCTGCTTTATTGTTGCTTTCATCGCTGCACC 135492 ||||| ||||| ||| | | | || || | |||||| | || ||||| ||||| || Sbjct 90905 ATGATCCCTAC-CTTATTGACCGCAACTTCCGTTTTTATTATCGCATTCATTGCTGCTCC 90847 Query 135493 TCCCGTCGATATTGACGGCATCCGCGAACCTGTTGCTGGTTCTCTAATGTACGGAAATAA 135552 ||| || |||||||| || || || ||||||||| |||| ||||| | |||||||| || Sbjct 90846 TCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTTCTTTACGGAAACAA 90787 Query 135553 CATCATCTCTGGTGCTGTTATCCCT---TCTAGCAACGCCATCGGCCTTCACTTCTATCC 135609 || || || ||||| |||| ||| ||| ||| || || || | || || || || Sbjct 90786 TATTATTTCAGGTGCCATTATTCCTACCTCT-GCA--GCTATTGGTTTGCATTTTTACCC 90730 Query 135610 CATCTGGGAAGCTGCTTCTCTTGATGAGTGGCTATATAATGGTGGTCCTTATCAACTAGT 135669 |||||||||||||| || ||||||| |||||||| || |||||||||||| ||||| | Sbjct 90729 GATCTGGGAAGCTGCATCCGTTGATGAATGGCTATACAACGGTGGTCCTTATGAACTAAT 90670 Query 135670 GGTCTTCCACTTCCTTATCGGTGTCTTCTCTTACATGGGTCGCGAGTGGGAACTCTCTTA 135729 || | ||||| | | ||||| | ||| |||||||| || |||||||| || Sbjct 90669 TGTTCTACACTTTTTACTTGGTGTAGCTTGTTATATGGGTCGTGAATGGGAACTTAGTTT 90610 Query 135730 CCGACTGGGTATGCGCCCTTGGATTTGTGTCGCTTACTCAGCCCCTGTTGCCGCTGCTAC 135789 ||| ||||||||||| ||||||||| ||| || || ||||| |||||||| |||||||| Sbjct 90609 CCGTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTAC 90550 Query 135790 TGCTGTTTTCCTGGTCTACCCCTTTGGACAAGGTTCTTTCAGTGATGGTATGCCGCTTGG 135849 |||||||||| || ||||||| |||| ||||| ||| |||||||||||| || || Sbjct 90549 TGCTGTTTTCTTGATCTACCCAATTGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGG 90490 Query 135850 CATTTCTGGAACTTTTAACTACATGCTTGTTTTCCAGGCAGAACACAACATTCTCATGCA 135909 || ||||| ||||| |||| ||| |||| |||||||| || ||||||||||| ||||| Sbjct 90489 AATCTCTGGTACTTTCAACTTTATGATTGTATTCCAGGCTGAGCACAACATTCTTATGCA 90430 Query 135910 TCCTTTCCACATGTTGGGAGTTGCTGGGGTCTTCGGTGGTTCTCTGTTCTCTGCTATGCA 135969 || || |||||||| || || ||||| || ||||| ||||| || || ||||||||| Sbjct 90429 CCCATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGTTCCCTATTTAGTGCTATGCA 90370 Query 135970 TGGATCTCTTGTCACCTCTAGTCTTGTACGTGAGACGACTGAGGTAGAATCCCAGAACTA 136029 ||| || | || || |||||| | | | || || || || ||||| || | Sbjct 90369 TGGTTCCTTGGTAACTTCTAGTTTGATTAGGGAAACCACAGAAAATGAATCTGCTAATGA 90310 Query 136030 TGGTTACAAGTTCGGTCAAGAAGAAGAGACTTACAACATTGTTGCTGCTCATGGTTACTT 136089 ||||||| ||||||||||||||||| |||||||||||||| || ||||||||||| || Sbjct 90309 AGGTTACAGATTCGGTCAAGAAGAAGAAACTTACAACATTGTAGCCGCTCATGGTTATTT 90250 Query 136090 CGGTCGTCTGATCTTCCAATATGCGTCGTTCAACAACTCTCGTTCGCTACACTTTTTCCT 136149 || || |||||||||||||||| ||||||||||| ||||| |||| || ||| | Sbjct 90249 TGGCCGATTGATCTTCCAATATGCTAGTTTCAACAACTCCCGTTCTTTACATTTCTTCTT 90190 Query 136150 TGCTGCTTGGCCTGTTGTCGGTATCTGGTTTGCTGCCCTGGGCGTATCTACGATGGCGTT 136209 || |||||||| || || ||||| |||||| |||| | || | || ||||| || Sbjct 90189 AGCGGCTTGGCCGGTAGTAGGTATTTGGTTTACTGCTTTAGGTATTAGCACTATGGCTTT 90130 Query 136210 CAACCTCAATGGATTCAACTTCAACCAGTCCATTGTATCTTCTGAAGGTCGTGTACTCAA 136269 |||||| ||||| ||||| |||||||| || | || | | |||| ||||| | || Sbjct 90129 CAACCTAAATGGTTTCAATTTCAACCAATCAGTAGTTGATAGTCAAGGACGTGTTATTAA 90070 Query 136270 CACCTGGGCAGATGTGCTGAATCGTGCTGGTCTGGGTATGGAGGTGATGCACGAGCGT 136327 || ||||| ||| | | || |||||| || |||||||| || ||||| || ||| Sbjct 90069 TACTTGGGCTGATATTATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGT 90012 Score = 578 bits (640), Expect = 5e-160 Identities = 737/1009 (73%), Gaps = 12/1009 (1%) Strand=Plus/Plus Query 137875 TGGATGACTGGATTAAACGAGATCGCTTTGTATTTGTGGGTTGGTCTGGACTACTACTTT 137934 ||||||||||| | | || ||||| || ||||| ||||||||||| ||| | || | Sbjct 122092 TGGATGACTGGTTACGGAGGGACCGCTTCGTTTTTGTAGGTTGGTCTGGTCTATTGCTCT 122151 Query 137935 TTCCCACTGCTTATTTGGCCCTTGGTGGCTGGCTTACTGGCACAACGTTTGTTACAAGCT 137994 |||| ||| ||||| || | || || ||| | || || ||||| ||||| || | Sbjct 122152 TTCCTTGTGCCTATTTCGCTTTAGGGGGTTGGTTCACAGGTACAACCTTTGTAACTTCAT 122211 Query 137995 GGTACACCCACGGGTTGGCGTCTAGTTATCTTGAAGGCGCTAATTTCCTCACAGCAGCTG 138054 |||| || || || ||||| | ||| | ||||| ||||| | || || || | Sbjct 122212 GGTATACTCATGGATTGGCCAGTTCCTATTTAGAAGGTTGCAATTTTTTAACCGCTGCAG 122271 Query 138055 TTTCGACTCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTCTC 138114 |||| ||||||||| || | | | |||||| | | |||| ||||||||||| | | Sbjct 122272 TTTCTACTCCTGCTAATAGTTTAGCGCATTCTTTGTTGTTACTGTGGGGTCCTGAAGCAC 122331 Query 138115 AAGGAGATATCGTCCGCTGGTTCCAACTTGGGGGACTCTGGACTTTTGTGGCGCTCCACG 138174 |||||||| | || |||| ||| | || || || ||| ||||||| || ||||||| Sbjct 122332 AAGGAGATTTTACTCGTTGGTGTCAATTAGGTGGTCTATGGGCTTTTGTTGCTCTCCACG 122391 Query 138175 GGGCCTTTAGTCTGATTGGATTCATGCTTCGCCAGTTTGAGATCTCTCG-TCTGGTAGGC 138233 | || || | || || || ||| | || || ||||| | | || |||| | | Sbjct 122392 GCGCTTTCGCATTAATAGGTTTTATGTTACGTCAATTTGAACTTGCCCGATCTGTT---C 122448 Query 138234 A--TCCGTCCCTACAACGCAATCGCATTCTCTGGTCCCATCGCTGTGTTCGTCAGCGTGT 138291 | | || || || || |||||||||||||||||||| || ||||| || || || | Sbjct 122449 AATTGCGACCTTATAATGCAATCGCATTCTCTGGTCCAATTGCTGTTTTTGTTTCTGTCT 122508 Query 138292 TCCTGATGTATCCTTTGGGTCAATCCAGTTGGTTCTTTGCTCCCTCCTTTGGTGTGGCAG 138351 |||| || ||||| | |||||||| ||||||||||||| || |||||||| || | Sbjct 122509 TCCTAATTTATCCACTAGGTCAATCTGGTTGGTTCTTTGCGCCTAGTTTTGGTGTAGCGG 122568 Query 138352 CAATCTTCCGAT---TCCTGTTGTTCCTTCAGGGTTTCCATAACTGGACCCTCAACCCCT 138408 | || || |||| |||| || |||| ||||||| ||||| ||||| | ||||| | Sbjct 122569 CTATATTTCGATTCATCCTCTTTTTCC--AAGGGTTT-CATAATTGGACATTGAACCCGT 122625 Query 138409 TTCATATGATGGGCGTAGCAGGTATTCTTGGTGGTGCTCTGCTCTGTGCTATTCATGGTG 138468 ||||||||||||| || || || | || || | |||||||| || ||||||||||||| Sbjct 122626 TTCATATGATGGGAGTCGCCGGCGTACTGGGCGCGGCTCTGCTATGCGCTATTCATGGTG 122685 Query 138469 CTACAGTAGAAAATACTTTGTATGAAGATGGCGAACAATCAAATACTTTTAAAGCATTTG 138528 |||| |||||||||||||| | ||||||||| || ||||||| || || ||| Sbjct 122686 CTACTGTAGAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACATTCCGTGCTTTTA 122745 Query 138529 AACCTACTCAAGAAGAAGAAACCTATTCAATGGTTACTGCTAACCGTTACTGGTCGCAAA 138588 | || ||||||| |||||||| ||||||||||| || |||||||| | ||||| |||| Sbjct 122746 ACCCAACTCAAGCCGAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTGGTCACAAA 122805 Query 138589 TCTTTGGAATTGCTTTTAGTAATAAGCGTTGGCTTCACTTCTTTATGCTCTTTGTTCCCG 138648 ||||||| |||||||| ||||| |||||| | || ||||||||| | ||||| || | Sbjct 122806 TCTTTGGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTGTACCGG 122865 Query 138649 TCATGGGTCTCTGGACTAGTAGTATTGGTATTATTGGTCTTGCTCTTAACCTACGAGCGT 138708 | | ||| | |||| ||| | |||| | | ||||| ||| | |||||||| || | Sbjct 122866 TAACTGGTTTATGGATGAGTGCTCTTGGAGTAGTCGGTCTAGCTTTGAACCTACGTGCCT 122925 Query 138709 ATGATTTCGTATCGCAAGAAATTCGTGCAGCAGAAGATCCTGAATTCGAGACCTTCTACA 138768 |||| ||||| || || ||||| |||||||| |||||||| ||||| ||||| ||||| | Sbjct 122926 ATGACTTCGTTTCCCAGGAAATCCGTGCAGCGGAAGATCCAGAATTTGAGACTTTCTATA 122985 Query 138769 CCAAGAACATTCTTCTGAATGAAGGTCTGCGTGCCTGGATGGCTCCTGTGGATCAACCTC 138828 | || || |||||| | || |||||| | ||||| |||||||| || ||||| |||| Sbjct 122986 CTAAAAATATTCTTTTAAACGAAGGTATTCGTGCTTGGATGGCGGCTCAAGATCAGCCTC 123045 Query 138829 ACGAAAACTTTGTTTTTCCTGAAGAAGTATTGCCAAGAGGCAACGCTCT 138877 | |||||| || | || ||||| || || | ||| | || |||||||| Sbjct 123046 ATGAAAACCTTATATTCCCTGAGGAGGTTCTACCACGTGGAAACGCTCT 123094 >seq352 Length=147189 Score = 244 bits (270), Expect = 1e-59 Identities = 324/449 (72%), Gaps = 17/449 (4%) Strand=Plus/Minus Query 135881 TTCCAGGCAGAACACAACATTCTCATGCATCCTTTCCACATGTTGGGAGTTGCTGGGGTC 135940 |||||||| || ||||||||||| ||||| || || |||||||| || || ||||| || Sbjct 89326 TTCCAGGCTGAGCACAACATTCTTATGCACCCATTTCACATGTTAGGTGTAGCTGGTGTA 89267 Query 135941 TTCGGTGGTTCTCTGTTCTCTGCTATGCATGGATCTCTTGTCACCTCTAGTCTTGTACGT 136000 || || || || || || |||||||||||| || | || || | |||| | | | Sbjct 89266 TTTGGCGGCTCCCTATTTAGTGCTATGCATGGTTCCTTGGTAACTTATAGTTTGATCAGG 89207 Query 136001 GAGACGACTGAGGTAGAATCCCAGAACTATGGTTACAAGTTCGGTCAAGAAGAAGAGACT 136060 || || || || ||||| || | ||||||| ||||||||||||||||| ||| Sbjct 89206 GAAACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATTCGGTCAAGAAGAAGAAACT 89147 Query 136061 TACAACATTGTTGCTGCTCATGGTTACTTCGGTCGTCTGATCTTCCAATATGCGTCGTTC 136120 ||||||||||| |||||||||||||| || || || |||||||| ||| ||| Sbjct 89146 TACAACATTGTAGCTGCTCATGGTTATTTTGGCCGATTGATCTTC-------CGT--TTC 89096 Query 136121 AACAACTCTCGTTCGCTACACTTTTTCCTTGCTGCTTGGCCTGTTGTCGGTATCTGGTTT 136180 ||||| |||||||| |||| || ||| | || |||||||| || || ||||| |||||| Sbjct 89095 AACAATTCTCGTTCTTTACATTTCTTCTTAGCGGCTTGGCCGGTAGTAGGTATTTGGTTT 89036 Query 136181 GCTGCCCTGGGCGTATCTACGATGGCGTTCAACCTCAATGGATTCAACTTCAACCAGTCC 136240 |||| | || | || ||||| |||||||| ||||| ||||| |||||||| || Sbjct 89035 ACTGCTTTAGGTATTAGCACTATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATCA 88976 Query 136241 ATTGTATCTTCTGAAGGTC--GTGTACTCAACACCTGGGCAGATGTGCTGAATCGTGCTG 136298 | || ||| ||| |||| | || || ||||| ||| | | || |||||| Sbjct 88975 GTAGT------TGATAGTCAAGTGTTATTAATACTTGGGCTGATATTATTAACCGTGCTA 88922 Query 136299 GTCTGGGTATGGAGGTGATGCACGAGCGT 136327 | |||||||| || ||||| || ||| Sbjct 88921 ACTTTGGTATGGAAGTTATGCATGAACGT 88893 >seq438 Length=150666 Score = 87.8 bits (96), Expect = 2e-12 Identities = 101/135 (75%), Gaps = 1/135 (1%) Strand=Plus/Minus Query 135605 TATCCCATCTGGGAAGCTGCTTCTCTTGATGAGTGGCTATATAATGGTGGTCCTTATCAA 135664 || || ||||||||||||| | ||||||| |||||||| || |||||||||||| || Sbjct 89508 TACCCGATCTGGGAAGCTGAATTCGTTGATGAATGGCTATACAACGGTGGTCCTTATGAA 89449 Query 135665 CTAGTGGTCTTCCACTTCCTTATCGGTGTCTTCTCTTACATGGGTCGCGAGTGGGAACTC 135724 ||| | || | ||||| ||| |||| | ||| |||||||| || |||||||| Sbjct 89448 CTAATTGTTCTACACTT-TTTACTTGTGTAGCTTGTTATATGGGTCGTGAATGGGAACTT 89390 Query 135725 TCTTACCGACTGGGT 135739 || ||| |||||| Sbjct 89389 AATTTCCGTCTGGGT 89375 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627914873907200