Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thlaspi_20arvense_20[genbank_20GCA_5F000956625.1_202015-03-19] 6,768 sequences; 343,012,389 total letters Query= NC_006884.2 Length=178249 Score E Sequences producing significant alignments: (Bits) Value seq161 515 4e-141 seq352 268 1e-66 seq842 89.7 6e-13 >seq161 Length=278270 Score = 515 bits (570), Expect = 4e-141 Identities = 718/1001 (72%), Gaps = 4/1001 (0%) Strand=Plus/Minus Query 170666 TTTTGTGAGTGGGTAACATCCACTGACAATCGCATCTACGTTGGTTGGTTTGGTGTCTTA 170725 || ||| | ||| |||| |||||| || || | ||| |||| ||||||||||| || Sbjct 90965 TTCTGTAACTGGATAACCAGCACTGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTG 90906 Query 170726 ATGATCCCATGTCTTCTA-ACTGCTGCTGCTTGTTTCATTGTAGCATTCATCGCTGCTCC 170784 |||||||| | ||| | || || || | ||| ||| | |||||||| |||||||| Sbjct 90905 ATGATCCC-TACCTTATTGACCGCAACTTCCGTTTTTATTATCGCATTCATTGCTGCTCC 90847 Query 170785 TCCAGTCGATATCGACGGAATCAGAGAACCAGTTGCGGGTTCT-TTCTTATATGGTAACA 170843 |||||| ||||| || || || | ||||| ||| | || ||| ||||| || || |||| Sbjct 90846 TCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTTCTT-TACGGAAACA 90788 Query 170844 ACATCATCTCTGGTGCTGTAGTTCCATCTTCAAACGCAATAGGATTACACTTCTATCCCA 170903 | || || || ||||| | |||| | || || || || || || || || || | Sbjct 90787 ATATTATTTCAGGTGCCATTATTCCTACCTCTGCAGCTATTGGTTTGCATTTTTACCCGA 90728 Query 170904 TCTGGGAAGCAGCCACTATGGACGAGTGGTTGTACAACGGAGGTCCTTACCAGTTAGTTA 170963 |||||||||| || | | || || ||| | |||||||| |||||||| | || || Sbjct 90727 TCTGGGAAGCTGCATCCGTTGATGAATGGCTATACAACGGTGGTCCTTATGAACTAATTG 90668 Query 170964 TTTTCCACTTCCTTATTGGAATCTCTGCCTACATGGGTAGACAGTGGGAACTATCATACA 171023 || | ||||| | |||| | || || |||||| | | |||||||| | | Sbjct 90667 TTCTACACTTTTTACTTGGTGTAGCTTGTTATATGGGTCGTGAATGGGAACTTAGTTTCC 90608 Query 171024 GACTAGGAATGAGACCTTGGATATGTGTAGCATACTCAGCACCTGTATCTGCAGCATTTG 171083 | || || ||| | |||||||| ||| ||||| ||||| ||||| | || || || Sbjct 90607 GTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTG 90548 Query 171084 CAGTATTCCTTGTGTATCCATTCGGTCAGGGTTCATTCTCTGATGGTATGCCACTAGGTA 171143 | || ||| | | || ||| | ||||| || || |||||||||||||| ||||| | Sbjct 90547 CTGTTTTCTTGATCTACCCAATTGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAA 90488 Query 171144 TCTCAGGTACGTTCAACTTCATGTTCGTGTTCCAAGCAGAACACAACATACTAATGCACC 171203 |||| ||||| |||||||| ||| | || ||||| || || |||||||| || ||||||| Sbjct 90487 TCTCTGGTACTTTCAACTTTATGATTGTATTCCAGGCTGAGCACAACATTCTTATGCACC 90428 Query 171204 CCTTCCATATGGCAGGTGTAGCAGGTATGTTCGGTGGTAGTCTCTTCAGTGCAATGCACG 171263 | || || ||| ||||||||| ||| | ||||| ||| || || ||||| ||||| | Sbjct 90427 CATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGTTCCCTATTTAGTGCTATGCATG 90368 Query 171264 GTTCTCTAGTGACATCTTCTCTAATCAGAGAGACAACTGAGAACGAGAGTCAAAACTACG 171323 |||| | || || ||| | | || || || || || || || || | || | | Sbjct 90367 GTTCCTTGGTAACTTCTAGTTTGATTAGGGAAACCACAGAAAATGAATCTGCTAATGAAG 90308 Query 171324 GCTATAAGTTCGGACAAGAAGAAGAAACATATAACATTGTTGCTGCTCATGGATACTTCG 171383 | || | ||||| |||||||||||||| || |||||||| || |||||||| || || | Sbjct 90307 GTTACAGATTCGGTCAAGAAGAAGAAACTTACAACATTGTAGCCGCTCATGGTTATTTTG 90248 Query 171384 GTAGATTAATCTTCCAGTATGCATCATTCAACAACTCTCGTTCATTACACTTCTTCCTCG 171443 | |||| |||||||| ||||| ||||||||||| ||||| ||||| |||||| | | Sbjct 90247 GCCGATTGATCTTCCAATATGCTAGTTTCAACAACTCCCGTTCTTTACATTTCTTCTTAG 90188 Query 171444 CTGTATTCCCTGTAGTCTGTGTATGGTTAACCTCTATGGGTATCTGTACAATGGCATTCA 171503 | | | || ||||| || | ||||| || || | ||||| | || ||||| |||| Sbjct 90187 CGGCTTGGCCGGTAGTAGGTATTTGGTTTACTGCTTTAGGTATTAGCACTATGGCTTTCA 90128 Query 171504 ACCTTAACGGATTCAACTTCAACCAATCAGTTGTAGATGCAAACGGAAAGATTGTACCAA 171563 |||| || || ||||| |||||||||||||| || ||| | ||| || | | Sbjct 90127 ACCTAAATGGTTTCAATTTCAACCAATCAGTAGTTGATAGTCAAGGACGTGTTATTAATA 90068 Query 171564 CATGGGGAGATGTTCTTAACAGAGCAAACCTTGGAATGGAAGTTATGCATGAAAGAAATG 171623 | |||| ||| || ||||| | || |||||||| |||||||||||||||||| | |||| Sbjct 90067 CTTGGGCTGATATTATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATG 90008 Query 171624 CACACAACTTCCCACTAGACCTAGCATCTGCTGAGTCTACA 171664 | ||||| ||||| ||||||||||| ||| |||| || || Sbjct 90007 CTCACAATTTCCCTCTAGACCTAGCTGCTGTTGAGGCTCCA 89967 Score = 392 bits (434), Expect = 4e-104 Identities = 716/1049 (68%), Gaps = 21/1049 (2%) Strand=Plus/Plus Query 171784 AAAGAGAATGGTTTGACGTTCTTGATGATTGGTTAAAGAGAGATCGTTTCGTATTCATCG 171843 ||| ||| | ||||| || | ||||| |||||| ||| || || ||||| || | | Sbjct 122071 AAAAAGATTTATTTGATATTATGGATGACTGGTTACGGAGGGACCGCTTCGTTTTTGTAG 122130 Query 171844 GATGGTCTGGTCTTTTACTTTTACCTTGTGCTTACCTAGCAATCGGAGGTTGGTTCGTAG 171903 | ||||||||||| || || || |||||||| || | || | || ||||||||| || Sbjct 122131 GTTGGTCTGGTCTATTGCTCTTTCCTTGTGCCTATTTCGCTTTAGGGGGTTGGTTCACAG 122190 Query 171904 GAACTACTTTCGTGACCTCATGGTACACACATGGTATTGCATCCTCATATCTTGAGGGAG 171963 | || || || || || |||||||| || ||||| | || || ||| | || || Sbjct 122191 GTACAACCTTTGTAACTTCATGGTATACTCATGGATTGGCCAGTTCCTATTTAGAAGGTT 122250 Query 171964 CAAACTTTTTAACTGCAGCAGTATCAACACCTGGTGATGCTATGGGTCATAGTCTATTGT 172023 || |||||||| || ||||| || || |||| | || | | | ||| | | |||| Sbjct 122251 GCAATTTTTTAACCGCTGCAGTTTCTACTCCTGCTAATAGTTTAGCGCATTCTTTGTTGT 122310 Query 172024 TCCTATGGGGACCTGAGGCACAAGGAGATCTTGTACGATGGTTTCAATTAGGTGGACTAT 172083 | || ||||| ||||| |||||||||||| || || |||| |||||||||||| |||| Sbjct 122311 TACTGTGGGGTCCTGAAGCACAAGGAGATTTTACTCGTTGGTGTCAATTAGGTGGTCTAT 122370 Query 172084 GGAACTTTGTAGCATTACATGGAGTCTTTGGACTCATAGGTTTCATGCTTAGACAGTTTG 172143 || ||||| || | || || | || | | | |||||||| ||| | | || |||| Sbjct 122371 GGGCTTTTGTTGCTCTCCACGGCGCTTTCGCATTAATAGGTTTTATGTTACGTCAATTTG 122430 Query 172144 AGATTGCAGGACTTGTTGGGATACGTCCTTACAACGCACTAGCATTCTCAGCAGTTATTG 172203 | |||| || |||| | || ||||| || ||| | |||||||| | |||| Sbjct 122431 AACTTGCCCGATCTGTTCAATTGCGACCTTATAATGCAATCGCATTCTCTGGTCCAATTG 122490 Query 172204 CAGTATTCACGAGCATCTTTCTAATATATCCATTAGGTCAGCATAGTTGGTTCTTCGCAC 172263 | || || |||| ||||| |||||| ||||||| | |||||||||| || | Sbjct 122491 CTGTTTTTGTTTCTGTCTTCCTAATTTATCCACTAGGTCAATCTGGTTGGTTCTTTGCGC 122550 Query 172264 CTTCATTTGGTGTCGCAGCAATCTTTCGTTATATTTTATTCATACAGGGTTTCCACAATA 172323 || |||||||| || || || ||||| | || | || | || || || || ||| Sbjct 122551 CTAGTTTTGGTGTAGCGGCTATATTTCGATTCATCCTCTTTTTCCAAGGGTTTCATAATT 122610 Query 172324 TAACTCTTAATCCATTTCATATGATGGGTGTAGCAGGTATACTTGGTGGAGCATTACTAT 172383 || | || || |||||||||||||| || || || |||| || | || | |||| Sbjct 122611 GGACATTGAACCCGTTTCATATGATGGGAGTCGCCGGCGTACTGGGCGCGGCTCTGCTAT 122670 Query 172384 GTGCCATACATGGTGCAACAGTACAGAACACATTGTATGAAGACACATCACAATACACTG 172443 | || || |||||||| || ||| | || || || | |||||| || Sbjct 122671 GCGCTATTCATGGTGCTACTGTAGAAAATACTTTATTTGAAGA---------------TG 122715 Query 172444 AAGGTAAGATTCAATCTACAACTTTCAGAGCATTCGATCCTACACAGGAAGAAGAAACTT 172503 | | | | ||| |||| ||| | || || | || || || | |||||||||| Sbjct 122716 --GTGATGGTGCAA-ATACA---TTCCGTGCTTTTAACCCAACTCAAGCCGAAGAAACTT 122769 Query 172504 ATAGTATGATTACTGCTAACAGATTCTGGTCACAGATATTTGGTATAGCATTTTCAAACA 172563 || ||| | || |||||| | || |||||||| || ||||| | || ||||| || | Sbjct 122770 ATTCAATGGTCACCGCTAACCGCTTTTGGTCACAAATCTTTGGGGTTGCTTTTTCCAATA 122829 Query 172564 AAAGATTCTTACACTTCCTTATGTTGTTCGTACCTGTCATGGGTATGTGGACATCATCTA 172623 || | | ||||| ||| ||||||| || ||||| || | ||| | |||| || Sbjct 122830 AACGTTGGTTACATTTCTTTATGTTATTTGTACCGGTAACTGGTTTATGGATGAGTGCTC 122889 Query 172624 TAGGTATCGTAGGTCTTGCACTTAACCTCAGAGCATACGACTTTGTATCTCAAGAGATAA 172683 | || | || ||||| || | ||||| | || || ||||| || || || || || Sbjct 122890 TTGGAGTAGTCGGTCTAGCTTTGAACCTACGTGCCTATGACTTCGTTTCCCAGGAAATCC 122949 Query 172684 GAGCAGCAGAAGACCCAGAGTTTGAAACCTTCTACACTAAGAACATTCTTCTTAATGAAG 172743 | ||||| ||||| ||||| ||||| || ||||| ||||| || |||||| | || |||| Sbjct 122950 GTGCAGCGGAAGATCCAGAATTTGAGACTTTCTATACTAAAAATATTCTTTTAAACGAAG 123009 Query 172744 GTATGAGAGCATGGATGTCATCTGTCGATCAACCCCATGAGAACTTTGTGTTCCCAGAAG 172803 |||| | || |||||| | || ||||| || ||||| ||| || | ||||| || | Sbjct 123010 GTATTCGTGCTTGGATGGCGGCTCAAGATCAGCCTCATGAAAACCTTATATTCCCTGAGG 123069 Query 172804 AAGTCTTGCCACGAGGCAACGCACTATAA 172832 | || | ||||| || ||||| || ||| Sbjct 123070 AGGTTCTACCACGTGGAAACGCTCTTTAA 123098 >seq352 Length=147189 Score = 268 bits (296), Expect = 1e-66 Identities = 355/492 (72%), Gaps = 13/492 (3%) Strand=Plus/Minus Query 171173 TTCCAAGCAGAACACAACATACTAATGCACCCCTTCCATATGGCAGGTGTAGCAGGTATG 171232 ||||| || || |||||||| || |||||||| || || ||| ||||||||| ||| | Sbjct 89326 TTCCAGGCTGAGCACAACATTCTTATGCACCCATTTCACATGTTAGGTGTAGCTGGTGTA 89267 Query 171233 TTCGGTGGTAGTCTCTTCAGTGCAATGCACGGTTCTCTAGTGACATCTTCTCTAATCAGA 171292 || || || || || ||||| ||||| ||||| | || || | | | | ||||| Sbjct 89266 TTTGGCGGCTCCCTATTTAGTGCTATGCATGGTTCCTTGGTAACTTATAGTTTGATCAGG 89207 Query 171293 GAGACAACTGAGAACGAGAGTCAAAACTACGGCTATAAGTTCGGACAAGAAGAAGAAACA 171352 || || || || || || | || | || || | ||||| |||||||||||||| Sbjct 89206 GAAACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATTCGGTCAAGAAGAAGAAACT 89147 Query 171353 TATAACATTGTTGCTGCTCATGGATACTTCGGTAGATTAATCTTCCAGTATGCATCATTC 171412 || |||||||| ||||||||||| || || || |||| ||||||| || ||| Sbjct 89146 TACAACATTGTAGCTGCTCATGGTTATTTTGGCCGATTGATCTTCC-GT--------TTC 89096 Query 171413 AACAACTCTCGTTCATTACACTTCTTCCTCGCTGTATTCCCTGTAGTCTGTGTATGGTTA 171472 ||||| |||||||| ||||| |||||| | || | | || ||||| || | ||||| Sbjct 89095 AACAATTCTCGTTCTTTACATTTCTTCTTAGCGGCTTGGCCGGTAGTAGGTATTTGGTTT 89036 Query 171473 ACCTCTATGGGTATCTGTACAATGGCATTCAACCTTAACGGATTCAACTTCAACCAATCA 171532 || || | ||||| | || ||||| |||||||| || || ||||| |||||||||||| Sbjct 89035 ACTGCTTTAGGTATTAGCACTATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATCA 88976 Query 171533 GTTGTAGATGCAAACGGAAAGATTGTACCAACATGGGGAGATGTTCTTAACAGAGCAAAC 171592 || || ||| | || || | || |||| ||| || ||||| | || ||| Sbjct 88975 GTAGTTGAT----AGTCAAGTGTTATTAATACTTGGGCTGATATTATTAACCGTGCTAAC 88920 Query 171593 CTTGGAATGGAAGTTATGCATGAAAGAAATGCACACAACTTCCCACTAGACCTAGCATCT 171652 |||| |||||||||||||||||| | ||||| ||||||||||| ||||| ||||| || Sbjct 88919 TTTGGTATGGAAGTTATGCATGAACGTAATGCTCACAACTTCCCTCTAGATCTAGCTGCT 88860 Query 171653 GCTGAGTCTACA 171664 | |||| || || Sbjct 88859 GTTGAGGCTCCA 88848 >seq842 Length=174314 Score = 89.7 bits (98), Expect = 6e-13 Identities = 75/92 (82%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 171573 ATGTTCTTAACAGAGCAAACCTTGGAATGGAAGTTATGCATGAAAGAAATGCACACAACT 171632 || || ||||| | || ||| |||| |||||||||||||||||| | ||||| ||||||| Sbjct 148254 ATATTATTAACCGTGCTAACTTTGGTATGGAAGTTATGCATGAACGTAATGCTCACAACT 148195 Query 171633 TCCCACTAGACCTAGCATCTGCTGAGTCTACA 171664 |||| ||||| ||||| ||| |||| || || Sbjct 148194 TCCCTCTAGATCTAGCTGCTGTTGAGGCTCCA 148163 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570220555259520