Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thlaspi_20arvense_20[genbank_20GCA_5F000956625.1_202015-03-19] 6,768 sequences; 343,012,389 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq69 154 2e-32 seq146 147 3e-30 seq2 98.7 1e-15 >seq69 Length=847923 Score = 154 bits (170), Expect = 2e-32 Identities = 404/606 (67%), Gaps = 8/606 (1%) Strand=Plus/Minus Query 33304 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGT 33363 || |||||||||||||||| || ||||||| | || | |||||||| || || ||| Sbjct 357030 CACGCGAAATCGCAGTGCAAGCCTTCGTCTCGAGAGATCAACTCGTTGGAGAAGGTTAGT 356971 Query 33364 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAG 33423 || ||||| || || || || || ||||| || || || ||| || || |||||| Sbjct 356970 CCCGGCATGAGCCCGCGTTTCTTCAGCCAGAAAATCGAGCAGAAGCTACCGGAGAAGAAG 356911 Query 33424 ATTCCTTCTACTGCA-GCAAAGGCAATAAGTCTCT-CTCCATAACCGGCGCTGTCATGTA 33481 || ||||| || ||| || ||||| | | | || | | | | | | | | | | | Sbjct 356910 ATGCCTTCGAC-GCAGGCGAAGGCGACGATACGCTCCGCGAAAGTCTGGGAT-CCGTCGA 356853 Query 33482 TCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAA 33541 ||||| | ||||| | |||||||| || ||||| || ||||| || || || Sbjct 356852 TCCACGTCATCGCCCACTGCGCCTTCTTCGCGACGCAAGGGATGGTTTCGATTGCGCGAA 356793 Query 33542 AGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTT 33601 | |||| || | | || || | || || | ||||| |||| | ||||| ||||| | Sbjct 356792 ACAGATGGTCTCTCTCCTTGTTGTCCTTGATGTAAGTGTCGAGGAGGAGACTGTACATCT 356733 Query 33602 CCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCT 33661 | ||||| ||||| || || || ||||| || ||||||||| | ||||| | | | Sbjct 356732 CGGAATGGATGTTCTCGATCGCGATCTGGAACCCGTAGAAAGCACGCGCCTCCGAGACTT 356673 Query 33662 GTACTTCTGTACA-AAATCGTTCCGCCAAATTTTCATTCACTATTCCGTCACTGGCTGCA 33720 | || || | ||| ||||| || | ||| || || |||||||| ||| || Sbjct 356672 GAACATC-GGACATGAATCGAGAAGCGAGATTCTCCAGAACGATTCCGTCTGAGGCGGCG 356614 Query 33721 AAAAACGCCAATACATGTTTTATAAAATATTTTTCGTC-TGGTGTTAGTTTATTCCAATC 33779 || || || | || ||||| || || | ||| | | || | || || | ||| || Sbjct 356613 AAGAAGGCGAGGACGTGTTTGATGAAGTGCCGCTCGCCGTCGT-TGAGATTCTCCCAGTC 356555 Query 33780 ATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTT 33839 || | ||||| ||| ||||| ||| | |||||||| ||||| || ||||| || Sbjct 356554 GCGACCGTCCTGAGATAGATCGACTTCCTCCGCCGTCCAAAACGATGCTTCGGCCTTCTT 356495 Query 33840 ATACATGTTCCAGATGTCATAATATTGGATTGGGAAAATAACAAATCTATTTGGATTTGG 33899 ||||| | |||||| | || || || ||||| ||| ||||| | ||| |||| Sbjct 356494 GTACATCTCCCAGATCTGTGGGTAGTGAATCGGGAACATACAGAATCTGTCTGGGGTTGG 356435 Query 33900 TGCAAG 33905 | ||| Sbjct 356434 AGTAAG 356429 >seq146 Length=264749 Score = 147 bits (162), Expect = 3e-30 Identities = 410/615 (67%), Gaps = 23/615 (4%) Strand=Plus/Plus Query 33298 ATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAAC 33357 |||||||| |||||||||||||| || || ||||||| || | ||||||||| || Sbjct 120984 ATCAAACAAGCGAAATCGCAGTGAAGGCCTTCGTCTCGCGAGATCAATTCGTTGGAGAAA 121043 Query 33358 GTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAA 33417 ||||| || ||||||| || || || || ||||| || || || ||| || || Sbjct 121044 GTGAGCCCAGGCATTAAACCTCGTTTCTTCAGCCAGAAAATCGAGCAGAAGCTACCGGAG 121103 Query 33418 AAGAAGATTCCTTCTACTGCAGC-AAAGGCA--ATAAGTCTCTCTCCATAACCGGCGCTG 33474 |||||||| ||||| || ||| |||| || ||| || || | | || ||| Sbjct 121104 AAGAAGATACCTTCGACGCAAGCGAAAGCCACGATACGT---TCAGCGAA----GCTCTG 121156 Query 33475 TCAT--GT--ATCCACTTTTGAGCCCAATCG-GCCTTCTTTTTTACACAAGGCATCGTTT 33529 || || ||||| || |||| |||| ||| | || || || || || |||| Sbjct 121157 AGATCCGTCGATCCATTTCATCGCCC-ATCGCGCCATTTTCGCGACGCAGGGAATGGTTT 121215 Query 33530 CTATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAA 33589 | || || ||||||| | | | || || | ||||| | || ||||||| | | Sbjct 121216 CGATTGCGCGGAAGAGATGATCTCTCTCTTTGTTGTCTTTGATGTAGGTATCGAGAAGGA 121275 Query 33590 GACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAG 33649 |||| ||||| || || ||||| || || || || ||||| ||||||||||| | || Sbjct 121276 GACTGTACATCTCGGAGTGAATATTCTCGATCGCGATCTGGAATCCGTAGAAGGCACGAG 121335 Query 33650 CCTCGGTAATCTGTACTTCTGTACA-AAATCGTTCCGCCAAATTTTCATTCACTATTCCG 33708 |||||| | || || || | ||| || || | | ||| || || |||||| Sbjct 121336 CCTCGGAGACTTGAACATC-GGACATGAACCGGGAAGATAGATTCTCCAGAACGATTCCG 121394 Query 33709 TCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTC-TGGTGTTAG 33767 ||| || || || || || | || || || | || | |||||| | || |||| Sbjct 121395 TCAGATGCGGCGAAGAAAGCGAGGACGTGCTTGACGAAGTGCCGTTCGTCGTCGT-TTAG 121453 Query 33768 ---TTTATTCCAATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGA 33824 ||| | ||| || | ||| | ||||| ||| |||||||| | ||||| || || Sbjct 121454 GGCTTTTTCCCAGTCGCGGTAATCCTGAGATAGATCGACTTCTTCGGCGGTCCAGAAAGA 121513 Query 33825 TGCCTCTGCCTTTTTATACATGTTCCAGATGTCATAATATTGGATTGGGAAAATAACAAA 33884 || || || || || ||||| | |||||| | |||||||| ||||| ||| || Sbjct 121514 AGCTTCGGCTTTCTTGTACATCTCCCAGATCTGTGGGTATTGGATCGGGAACATACAGAA 121573 Query 33885 TCTATTTGGATTTGG 33899 || || |||| |||| Sbjct 121574 TCGATCTGGACTTGG 121588 >seq2 Length=2373158 Score = 98.7 bits (108), Expect = 1e-15 Identities = 144/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 63371 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 63430 |||||| ||||| | || | ||| || | ||| | || | ||||||||||| |||||| Sbjct 1333101 TCCTCCTTGATCAACATAGCGAGCAGTATCATTGAATACCCGCAACATTGGAACAATACC 1333160 Query 63431 GTTTGATATACCATTGGTACCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGA 63490 || ||| ||||| || || || || |||||| | ||||| || || |||||| Sbjct 1333161 ATTAGATGCTCCATTTGTGCCACGAATGTAACTTCCAGTTGCACGGATGTTGTGAATTGA 1333220 Query 63491 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGAT 63550 | || || ||||| ||| ||| ||| | || ||| ||| || || ||||| || Sbjct 1333221 AACGCCAATACCCCCAGCCGATTTGCTGATAACAGCACATTCTTTCAATGTATCATATAT 1333280 Query 63551 ACCCTCTATGCTATCATCGATCAT 63574 ||||| ||||||||||| |||| Sbjct 1333281 TCCCTCGATGCTATCATCCTTCAT 1333304 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622894498666880