Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thlaspi_20arvense_20[genbank_20GCA_5F000956625.1_202015-03-19] 6,768 sequences; 343,012,389 total letters Query= NC_007151.1 Length=149622 Score E Sequences producing significant alignments: (Bits) Value seq69 98.7 1e-15 seq73 87.8 2e-12 seq187 82.4 7e-11 >seq69 Length=847923 Score = 98.7 bits (108), Expect = 1e-15 Identities = 132/184 (72%), Gaps = 0/184 (0%) Strand=Plus/Plus Query 26812 TCGAATTAGAATCAAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAG 26871 |||| | |||||| ||||| ||||| | || ||| ||||| ||||| |||| Sbjct 38478 TCGAGGTTGAATCATCGGACACGATCGACAATGTGAAAGCTAAGATCCAGGACAAGGAAG 38537 Query 26872 GGATACCTCCCGATCAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAA 26931 | || || || ||||| || | || || | || ||| |||||||| ||||||| | | | Sbjct 38538 GCATCCCGCCGGATCAGCAGCGGCTGATCTTCGCCGGAAAACAACTGGAAGATGGTCGGA 38597 Query 26932 ACGTCAGCGACTATAACATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAG 26991 || |||||| ||||| || || ||||| || | ||| ||||||| || ||||||| Sbjct 38598 CACTCGCCGACTACAACATCCAGAAGGAATCGACGCTTCATTTGGTCCTTAGGCTTAGAG 38657 Query 26992 GAGG 26995 |||| Sbjct 38658 GAGG 38661 >seq73 Length=838620 Score = 87.8 bits (96), Expect = 2e-12 Identities = 101/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 26862 GACAAAGAAGGGATACCTCCCGATCAACAAAGACTCATTTACGGCGGCAAACAACTCGAA 26921 ||||||||||| ||||| || ||||| ||||| || || | | ||| || ||||| || Sbjct 422935 GACAAAGAAGGTATACCACCAGATCAGCAAAGGCTGATATTTGCCGGGAAGCAACTGGAG 422994 Query 26922 GATGATAGAAACGTCAGCGACTATAACATTCAAAAAGAATCTACTATCCATCTGGTCCTG 26981 |||| ||| | || || ||||| || ||||| |||||| | ||||||||| || Sbjct 422995 GATGGACGAACACTGGCGGATTACAACATCCAGAAAGAGTCTACTCTTCATCTGGTCTTG 423054 Query 26982 AGACTTAGAGGAGGAA 26997 || || ||||| |||| Sbjct 423055 AGGCTCAGAGGTGGAA 423070 >seq187 Length=227058 Score = 82.4 bits (90), Expect = 7e-11 Identities = 147/215 (68%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 26766 AAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCA 26825 |||||||| | || || ||||| | || || || | |||||| | || | || || Sbjct 169908 AAAATGCAGATCTTCGTGAAAACCCTGACGGGGAAGACAATCACCCTTGAGGTCGAGTCC 169849 Query 26826 AACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGAT 26885 |||||||||||| | ||||| ||||| ||||| ||||| || ||||| || Sbjct 169848 TCCGACACCATCGACAATGTCAAGGCGAAGATCCAGGACAAGGAAGGAATCCCTCCGGAC 169789 Query 26886 CAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTAT 26945 || || || | |||| || ||| || || ||||| || | | | | || |||||| Sbjct 169788 CAGCAGCGATTGATTTTCGCCGGGAAGCAGCTCGAGGACGGACGCACCCTCGCCGACTAC 169729 Query 26946 AACATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 ||||| || || || || || | || |||||||| Sbjct 169728 AACATCCAGAAGGAGTCGACGCTTCACCTGGTCCT 169694 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478621905160960