Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thlaspi_20arvense_20[genbank_20GCA_5F000956625.1_202015-03-19] 6,768 sequences; 343,012,389 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq45 102 2e-16 seq1846 96.9 9e-15 seq2 93.3 1e-13 >seq45 Length=496881 Score = 102 bits (112), Expect = 2e-16 Identities = 114/150 (76%), Gaps = 2/150 (1%) Strand=Plus/Plus Query 111672 ATGGCACTTCCACCATGTCATCTTATGTGC-CAGTTTTATGTACACGACGGGATGCTTTC 111730 ||||||||||| ||||| || | | | ||| ||||| ||||| | || |||||| Sbjct 239143 ATGGCACTTCCTCCATGCCA-CATGTTTGCACAGTTCTATGTTGCAAATGGCGAGCTTTC 239201 Query 111731 ATGCCAAATGTATCAGCGATCTGCTGATATTGGTCTTGGTGTTCCGTTTAATATTGCAAG 111790 ||| |||||||||||||| || |||||||| ||||||||||| ||||| || ||||| Sbjct 239202 ATGTCAAATGTATCAGCGGTCAGCTGATATGGGTCTTGGTGTACCGTTCAACATTGCCTC 239261 Query 111791 TTACGCACTACTTACTTGCTTAATCGCTCA 111820 || | || ||||| ||| | ||||||| Sbjct 239262 ATATTCCCTTCTTACATGCATCCTCGCTCA 239291 >seq1846 Length=39165 Score = 96.9 bits (106), Expect = 9e-15 Identities = 127/176 (72%), Gaps = 0/176 (0%) Strand=Plus/Plus Query 111702 CAGTTTTATGTACACGACGGGATGCTTTCATGCCAAATGTATCAGCGATCTGCTGATATT 111761 ||||| ||||| || || ||| ||||| ||||||||||| || || ||||| || Sbjct 5807 CAGTTCTATGTGGCAGAAGGAGAGCTCTCATGTCAAATGTATCAACGTTCAGCTGACATG 5866 Query 111762 GGTCTTGGTGTTCCGTTTAATATTGCAAGTTACGCACTACTTACTTGCTTAATCGCTCAT 111821 || |||||||| |||||||| ||||| ||| | || ||||||||| | |||||||| Sbjct 5867 GGCCTTGGTGTGCCGTTTAACATTGCTTCCTACTCTCTTCTTACTTGCATGCTCGCTCAT 5926 Query 111822 TTTACAAATCTCAAACCGGGTGAATTCATTCACGTTATCGGAGATGCGCATGTTTA 111877 | |||| || || || || || || ||||| || ||||| ||||| || Sbjct 5927 GTGTGCGATCTTGTTCCTGGCGATTTTATCCATGTTATTGGGGATGCTCATGTGTA 5982 >seq2 Length=2373158 Score = 93.3 bits (102), Expect = 1e-13 Identities = 155/220 (70%), Gaps = 3/220 (1%) Strand=Plus/Minus Query 363622 ATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAATTGTGCTCTTATTTCC 363681 |||||||| ||| ||||||||| || | ||| ||| | || | |||||| |||| | Sbjct 1333304 ATGAAGGATGATAGCATCGAGGGAATATATGATACATTGAAAGAATGTGCTGTTATCAGC 1333245 Query 363682 AAGAATGCAGGCGGAATTGGTGTATCGATCCACAATGTTCGTGCA-CAGAACAGTTACAT 363740 || || || || ||||| || || || ||||| | |||||| | | | |||||||| Sbjct 1333244 AAATCGGCTGGGGGTATTGGCGTTTCAATTCACAACATCCGTGCAACTGGA-AGTTACAT 1333186 Query 363741 TCGCGGCACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGTGTGTTTGACAATAC 363800 ||| |||||| ||| || ||||| | ||||| ||| | || || || | |||| Sbjct 1333185 TCGTGGCACAAATGGAGCATCTAATGGTATTGTTCCAATGTTGCGGGTATTCAATGATAC 1333126 Query 363801 TGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGG 363840 ||| | || || || || || ||||| ||| | |||||| Sbjct 1333125 TGCTCGCTATGTTGATCAAGGAGGAGGCAAGAG-AAAGGG 1333087 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303240579692576