Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thlaspi_20arvense_20[genbank_20GCA_5F000956625.1_202015-03-19] 6,768 sequences; 343,012,389 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq49 111 1e-19 seq65 107 2e-18 seq252 95.1 1e-14 seq187 93.3 4e-14 seq442 91.5 1e-13 >seq49 Length=794425 Score = 111 bits (122), Expect = 1e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | ||||| ||||| | ||||| ||| | || ||| | ||||| ||| | Sbjct 171150 ATGCAAATTTTTGTTAAAACCCTCACTGGCAAAACCATCACCCTAGAAGTTGAGAGCTCG 171091 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 || |||||||| | ||||| |||||| || |||||||| || ||||| |||||| Sbjct 171090 GATACCATCGACAATGTCAAGGCTAAGATTCAGGATAAAGAAGGAATCCCTCCGGATCAA 171031 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGC-GATTATAA 24169 ||||| ||||| | | ||| || || ||||| |||| | | || | || ||||| || Sbjct 171030 CAGAGGCTGATCTTTGCCGGTAAACAGCTCGAGGATGGCCG-TACTTTGGCTGATTACAA 170972 Query 24170 CATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217 || ||||| || || || |||| || || | || || |||||||| Sbjct 170971 TATCCAAAAGGAGTCAACCCTTCACTTGGTTCTTAGGTTAAGAGGAGG 170924 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | ||||| ||||| | || || ||| | || ||| | ||||| ||| | Sbjct 170922 ATGCAGATCTTTGTTAAAACCCTTACAGGCAAAACCATCACCCTAGAAGTTGAGAGCTCG 170863 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||| ||||| | ||||| ||||||| ||||| ||||| || ||||| || || Sbjct 170862 GACACTATCGACAATGTCAAGGCAAAGATTCAGGACAAGGAAGGGATTCCTCCGGACCAG 170803 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||||| || || | || |||||||| || ||||||| | ||| | ||||| || Sbjct 170802 CAGAGGCTTATCTTCGCAGGCAAGCAGCTTGAAGATGGCCGAACTCTTGCAGATTACAAT 170743 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217 || || |||||||| || | || || || | || ||||||||||| Sbjct 170742 ATCCAGAAAGAATCAACCCTGCACTTGGTTCTTAGGTTGAGAGGAGG 170696 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || || ||||| | ||||| ||| | || ||| | ||||| ||| | Sbjct 170694 ATGCAGATCTTCGTCAAAACCCTCACTGGCAAAACCATCACCCTAGAAGTTGAGAGCTCA 170635 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||| ||||| | || ||| |||||| ||||| ||||| || ||||| || ||| Sbjct 170634 GACACAATCGACAATGTTAAAGCTAAGATTCAAGACAAGGAAGGGATCCCTCCGGACCAA 170575 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 |||||||| || | || ||||| || || ||||||| | | | || ||||| || Sbjct 170574 CAGAGACTCATCTTCGCAGGCAAACAGCTTGAAGATGGCCGCACTCTCGCTGATTACAAT 170515 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217 || || ||||| || || | || || || | || ||||||||||| Sbjct 170514 ATCCAGAAAGAGTCAACCCTGCACTTGGTTCTTAGGTTGAGAGGAGG 170468 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | ||||| || || | || || || |||| ||| |||| || || | Sbjct 171378 ATGCAGATCTTTGTTAAGACTCTTACAGGCAAGACGATAACCCTCGAGGTAGAAAGCTCG 171319 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||||||||| | ||||| ||||| || |||||||| || |||||||| || Sbjct 171318 GACACCATCGACAACGTCAAGGCCAAGATCCAGGATAAAGAAGGAATCCCTCCCGACCAG 171259 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||||| || || | | ||| || || ||||| |||| | ||| | ||||| || Sbjct 171258 CAGAGGCTCATCTTTGCCGGTAAACAGCTCGAGGATGGCCGAACTCTGGCTGATTACAAT 171199 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217 || |||||||| || || |||| || || | || |||||||| || Sbjct 171198 ATCCAAAAAGAGTCAACCCTTCACTTGGTTCTTAGGTTGAGAGGTGG 171152 >seq65 Length=625306 Score = 107 bits (118), Expect = 2e-18 Identities = 153/213 (72%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || || ||||| || || || || | |||||| | || || ||| | Sbjct 275808 ATGCAGATCTTCGTTAAAACCTTGACGGGCAAGACCATTACCCTGGAGGTGGAGAGCTCG 275867 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 |||||||| || | || || ||||| |||||||||||||| ||||| ||||| Sbjct 275868 GACACCATTGACAACGTGAAGGCCAAGATCCAGGACAAAGAAGGCATTCCTCCGGATCAG 275927 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGC-GATTATAA 24169 ||||| ||||| | || ||| ||||| || ||||| | ||| ||| | || || || || Sbjct 275928 CAGAGGCTGATCTTCGCCGGAAAGCAGCTTGAAGACGGCAG-AACATTGGCTGACTACAA 275986 Query 24170 CATTCAAAAAGAATCTACAATTCATTTAGTGTT 24202 ||| || || || |||||| |||| || ||||| Sbjct 275987 CATCCAGAAGGAGTCTACACTTCACTTGGTGTT 276019 >seq252 Length=291119 Score = 95.1 bits (104), Expect = 1e-14 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | ||||| || ||| | ||||| || ||||||| |||| || ||| | Sbjct 179315 ATGCAGATCTTTGTGAAGACACTCACTGGCAAGACGATTACACTCGAGGTGGAGAGCTCT 179256 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||| ||||| | ||||| ||||| || || |||||||| ||||| ||||| Sbjct 179255 GACACAATCGATAATGTCAAGGCCAAGATACAGGATAAGGAAGGCATTCCTCCGGATCAG 179196 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||| | || || | || ||| ||||| ||||| |||| | | | |||||| ||| Sbjct 179195 CAGCGTCTCATCTTCGCCGGAAAGCAGCTCGAGGATGGTCGCACATTGGCCGATTACAAC 179136 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTGTT 24202 |||||||| || || || | || || ||||| Sbjct 179135 ATTCAAAAGGAGTCGACTCTCCACTTGGTGTT 179104 >seq187 Length=227058 Score = 93.3 bits (102), Expect = 4e-14 Identities = 144/206 (70%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 23988 AAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCC 24047 |||||||| | || || ||||| | || || || | || ||| | || |||||| || Sbjct 169908 AAAATGCAGATCTTCGTGAAAACCCTGACGGGGAAGACAATCACCCTTGAGGTCGAGTCC 169849 Query 24048 AACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGAT 24107 |||||||||||| | ||||| ||||| ||||| ||||| || ||||| || Sbjct 169848 TCCGACACCATCGACAATGTCAAGGCGAAGATCCAGGACAAGGAAGGAATCCCTCCGGAC 169789 Query 24108 CAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTAT 24167 || ||| || |||||| || ||| ||||| ||||| || | | | | || ||| || Sbjct 169788 CAGCAGCGATTGATTTTCGCCGGGAAGCAGCTCGAGGACGGACGCACCCTCGCCGACTAC 169729 Query 24168 AACATTCAAAAAGAATCTACAATTCA 24193 ||||| || || || || || |||| Sbjct 169728 AACATCCAGAAGGAGTCGACGCTTCA 169703 >seq442 Length=166222 Score = 91.5 bits (100), Expect = 1e-13 Identities = 113/155 (73%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || || ||||| |||| ||||| |||| ||| |||| || ||| | | Sbjct 80874 ATGCAGATCTTCGTCAAAACCCTAACAGGAAAGACGATCACCCTCGAGGTGGAGAGCTCC 80933 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||||||||| | ||||| ||||| ||||| ||||| || ||||| || || Sbjct 80934 GACACCATCGACAACGTCAAGGCCAAGATCCAAGACAAGGAAGGTATTCCTCCGGACCAG 80993 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGA 24145 ||||| |||| | || ||| ||||||||||| || Sbjct 80994 CAGAGGTTGATCTTCGCCGGAAAGCAACTCGAGGA 81028 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429900536729040