Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thlaspi_20arvense_20[genbank_20GCA_5F000956625.1_202015-03-19] 6,768 sequences; 343,012,389 total letters Query= NC_007767.1 Length=132959 Score E Sequences producing significant alignments: (Bits) Value seq49 84.2 2e-11 >seq49 Length=794425 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 |||||||||||||| ||||| ||||| || |||||||| ||| | ||| ||| | Sbjct 171150 ATGCAAATTTTTGTTAAAACCCTCACTGGCAAAACCATCACCCTAGAAGTTGAGAGCTCG 171091 Query 115346 GACACTGTTGGACAA-GTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCA 115404 || || | | |||| || || || ||| ||||||||||| |||| ||||| Sbjct 171090 GATACCATCG-ACAATGTCAAGGCTAAGATTCAGGATAAAGAAGGAATCCCTCCGGATCA 171032 Query 115405 GCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAA 115464 || || || || | ||| || ||||| | || |||| | || |||| ||||| || Sbjct 171031 ACAGAGGCTGATCTTTGCCGGTAAACAGCTCGAGGATGGCCGTACTTTGGCTGATTACAA 170972 Query 115465 CATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGG 115512 || ||||| ||||| || | || |||| | || || ||||||| Sbjct 170971 TATCCAAAAGGAGTCAACCCTTCACTTGGTTCTTAGGTTAAGAGGAGG 170924 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 425308915500160