Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thlaspi_20arvense_20[genbank_20GCA_5F000956625.1_202015-03-19] 6,768 sequences; 343,012,389 total letters Query= NC_008035.3 Length=126629 Score E Sequences producing significant alignments: (Bits) Value seq252 102 7e-17 seq442 98.7 8e-16 seq49 98.7 8e-16 seq187 95.1 1e-14 seq65 95.1 1e-14 >seq252 Length=291119 Score = 102 bits (112), Expect = 7e-17 Identities = 161/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 ||||| || ||||| || |||| ||| || || |||||||| || || ||||| || ||| Sbjct 179545 CCTCCACGAAGCCTGAGCACCAGATGAAGAGTCGACTCCTTCTGGATATTGTAATCAGCC 179604 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | ||| || ||||||| | || || || || | || | || ||| || ||| ||| Sbjct 179605 AATGTTCTGCCGTCCTCAAGCTGCTTTCCGGCGAAGATCAACCTCTGCTGATCCGGAGGG 179664 Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | ||| || ||||| || || || ||| || | | | | ||||| | ||| Sbjct 179665 ATGCCTTCCTTGTCCTGGATCTTGGC--CTTAACGTTGTCAATTGTGTCCGAGCTCTCAA 179722 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 |||| ||||||||| || || |||| |||||| || ||||||||||| Sbjct 179723 CCTCCAAGGTGATGGTCTTGCCCGTCAACGTTTTAACGAAAATCTGCAT 179771 Score = 96.9 bits (106), Expect = 3e-15 Identities = 160/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || || || || | || |||| || || || |||||||| || ||||||||||||||| Sbjct 179317 CCACCACGGAGACGCAACACCAAGTGAAGTGTAGACTCCTTCTGAATGTTGTAGTCGGCC 179376 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | ||| || ||||||| | || || || || | || | || || || ||| ||| Sbjct 179377 AATGTTCTGCCGTCCTCAAGCTGCTTTCCGGCGAAGATCAACCTTTGCTGATCCGGAGGA 179436 Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | ||| || ||||| || ||||| |||||| | | | | ||||| | |||| Sbjct 179437 ATGCCTTCCTTGTCTTGGATCTTTGC--CTTCACGTTGTCAATCGTGTCCGAGCTCTCCA 179494 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 |||| ||||| || || ||||||| ||||| || ||||||||||| Sbjct 179495 CCTCCAATGTGATCGTCTTGCCGGTCAAGGTTTTAACGAAAATCTGCAT 179543 Score = 86.0 bits (94), Expect = 5e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || |||| || || || ||||||||||| ||||||||||| |||| || | ||| Sbjct 178648 AGAACCAAGTGAAGAGTCGACTCCTTTTGGATGTTGTAGTCAGCCAATGTGCGACCATCC 178707 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCG 16843 || | ||||| || || | || || ||||| |||||| ||| | || || ||||| Sbjct 178708 TCAAGCTGTTTCCCAGCGAAGATGAGACGCTGCTGGTCCGGAGGGATCCCTTCCTTGTCT 178767 Query 16844 GCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTT 16903 || | | |||||| | | | | ||||| | ||| |||| |||||||| Sbjct 178768 TGGATCTTCGCCTTCACGTTGTCAATGGTGTCCGAGCTCTCAACCTCCAGTGTGATGGTC 178827 Query 16904 TTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || ||||| | || || |||||||||||||| Sbjct 178828 TTACCGGTTAAGGTCTTCACAAAAATCTGCAT 178859 >seq442 Length=166222 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || || || || | || |||| || || || |||||||| || ||||||||||| ||| Sbjct 81328 CCACCACGGAGACGCAAGACCAAGTGAAGTGTAGACTCCTTCTGGATGTTGTAGTCAGCC 81269 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | ||| | |||| || | ||| || || || | || | | ||| || ||| ||| Sbjct 81268 AAAGTTCGGCCGTCTTCAAGTTGCTTTCCGGCGAAGATCAATCTCTGCTGATCCGGAGGA 81209 Query 16829 ACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTT 16888 | || || ||||| |||| |||||| | | | | ||||||| | |||| | Sbjct 81208 ATACCTTCCTTGTCCTGGATTTTAGCCTTCACGTTGTCAATAGTGTCGGAGCTCTCCACT 81149 Query 16889 TCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 |||| |||||||| |||||||||| ||| ||||| || || ||||| Sbjct 81148 TCCAAAGTGATGGTCTTTCCGGTCAACGTCTTGACGAAGATTTGCAT 81102 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || || || ||||| || |||| || || || |||||||| || ||||||||||||||| Sbjct 80872 CCGCCACGGAGCCTGAGGACCAAGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGGCC 80813 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | ||| | |||| ||||| || || || || | ||||||| ||| || ||| ||| Sbjct 80812 AAAGTTCGGCCGTCTTCCAACTGCTTTCCGGCGAAGATAAGCCTCTGCTGATCCGGAGGA 80753 Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | || || || || || || ||| || || | | | | ||||| | ||| Sbjct 80752 ATCCCTTCCTTATCCTGGATTTTGGCT--TTAACGTTGTCGATGGTGTCAGAGCTTTCCA 80695 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || | |||||| || || |||||||| || || || || |||||||| Sbjct 80694 CCTCGAGGGTGATAGTCTTCCCGGTCAGAGTCTTAACGAAGATCTGCAT 80646 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || || || ||||| || || | ||| || || |||||||| || ||||||||||| || Sbjct 81100 CCACCACGGAGCCTGAGCACGAGATGAAGGGTCGACTCCTTCTGGATGTTGTAGTCAGCA 81041 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | || | ||||||| | ||| || || || | || | || ||| |||||| ||| Sbjct 81040 AGAGTCCGGCCGTCCTCGAGTTGCTTTCCGGCGAAGATCAACCTCTGCTGGTCCGGAGGA 80981 Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | || || ||||| || || || ||| || | | | | |||||| | |||| Sbjct 80980 ATACCTTCCTTGTCTTGGATCTTGGC--CTTGACGTTGTCGATGGTGTCGGAGCTCTCCA 80923 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || | |||||| || ||||| || || |||||||| || |||||||| Sbjct 80922 CCTCGAGGGTGATCGTCTTTCCTGTTAGGGTTTTGACGAAGATCTGCAT 80874 >seq49 Length=794425 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 ||||||| || ||| || |||| || || || ||||||||||| || ||||| || ||| Sbjct 170924 CCTCCTCTTAACCTAAGAACCAAGTGAAGGGTTGACTCCTTTTGGATATTGTAATCAGCC 170983 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | || | | ||||| | ||||| || ||| | || |||| |||||| ||| ||| Sbjct 170984 AAAGTACGGCCATCCTCGAGCTGTTTACCGGCAAAGATCAGCCTCTGTTGATCCGGAGGG 171043 Query 16829 ACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTT 16888 | || ||||| || ||| | ||| || | | | | || || | ||| | Sbjct 171044 ATTCCTTCTTTATCCTGAATCTTAGCCTTGACATTGTCGATGGTATCCGAGCTCTCAACT 171103 Query 16889 TCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || | |||||||||||| || || || ||||| |||||||| ||||| Sbjct 171104 TCTAGGGTGATGGTTTTGCCAGTGAGGGTTTTAACAAAAATTTGCAT 171150 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 ||||||| | ||| || |||| ||||| || || || || || || ||||| || || Sbjct 170696 CCTCCTCTCAACCTAAGAACCAAGTGCAGGGTTGATTCTTTCTGGATATTGTAATCTGCA 170755 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | ||| | | || || | || ||||| || | ||||||| ||| |||||| ||| Sbjct 170756 AGAGTTCGGCCATCTTCAAGCTGCTTGCCTGCGAAGATAAGCCTCTGCTGGTCCGGAGGA 170815 Query 16829 ACGCCCTCTTTGTCGGCAAT--TTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | || || ||||| ||| |||| ||| || | | | | |||||| | ||| Sbjct 170816 ATCCCTTCCTTGTCCTGAATCTTTGC--CTTGACATTGTCGATAGTGTCCGAGCTCTCAA 170873 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 ||| | |||||||||||| || || || ||||| ||||| |||||||| Sbjct 170874 CTTCTAGGGTGATGGTTTTGCCTGTAAGGGTTTTAACAAAGATCTGCAT 170922 Score = 87.8 bits (96), Expect = 1e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 16733 TGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCCAATTGT 16792 || ||||| |||||||| ||||||||||| || || | || | ||||| | ||| Sbjct 170036 TGAAGCGTTGACTCCTTCTGTATGTTGTAATCAGCAAGAGTGCGACCATCCTCTAGCTGT 170095 Query 16793 TTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCGGCAATTTGC 16852 ||||| || | || || | |||||| ||| ||| | || || ||||| ||| | | Sbjct 170096 TTGCCGGCGAAGATGAGTCTCTGTTGATCCGGAGGGATTCCTTCCTTGTCTTGAATCTTC 170155 Query 16853 TGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTTTTCCGGTC 16912 || || | | | | ||||| | |||| ||||| || |||||||| ||||| Sbjct 170156 GCTTTAACATTGTCGATTGTGTCTGAGCTCTCCACTTCCAATGTTATGGTTTTACCGGTA 170215 Query 16913 AGCGTTTTGACAAAAATCTGCAT 16935 || || |||||||| |||||||| Sbjct 170216 AGGGTCTTGACAAATATCTGCAT 170238 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 ||||||| | ||| || |||| ||||| || ||||| || || || ||||| || || Sbjct 170468 CCTCCTCTCAACCTAAGAACCAAGTGCAGGGTTGACTCTTTCTGGATATTGTAATCAGCG 170527 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | || | | || || | |||||||| || | || || | |||||||||| ||| Sbjct 170528 AGAGTGCGGCCATCTTCAAGCTGTTTGCCTGCGAAGATGAGTCTCTGTTGGTCCGGAGGG 170587 Query 16829 ACGCCCTCTTTGTCGGCAATTT--GCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | || || ||||| ||| | ||| || || | | | | ||||| | ||| Sbjct 170588 ATCCCTTCCTTGTCTTGAATCTTAGCT--TTAACATTGTCGATTGTGTCTGAGCTCTCAA 170645 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 ||| | |||||||||||| || || || |||||||| || |||||||| Sbjct 170646 CTTCTAGGGTGATGGTTTTGCCAGTGAGGGTTTTGACGAAGATCTGCAT 170694 >seq187 Length=227058 Score = 95.1 bits (104), Expect = 1e-14 Identities = 150/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || |||| || ||||| |||||||| || |||||||||||||| | ||| ||||| Sbjct 169694 AGGACCAGGTGAAGCGTCGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGTCCGTCC 169753 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCG 16843 || | || || || || |||| | ||||| |||||| ||| | || || ||||| Sbjct 169754 TCGAGCTGCTTCCCGGCGAAAATCAATCGCTGCTGGTCCGGAGGGATTCCTTCCTTGTCC 169813 Query 16844 GCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTT 16903 || | | ||| || | | | | |||||| || ||| || | |||||| || Sbjct 169814 TGGATCTTCGCCTTGACATTGTCGATGGTGTCGGAGGACTCGACCTCAAGGGTGATTGTC 169873 Query 16904 TTTCCGGTCAGCGTTTTGACAAAAATCTGCATTTT 16938 || || ||||| ||||| || || ||||||||||| Sbjct 169874 TTCCCCGTCAGGGTTTTCACGAAGATCTGCATTTT 169908 >seq65 Length=625306 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 ||||| || ||||| || || | ||| || || |||||||| || ||||||||||| || Sbjct 275806 CCTCCACGAAGCCTGAGAACTAGATGAAGAGTCGACTCCTTCTGAATGTTGTAGTCAGCA 275747 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | ||| ||||||| | || || || || | || || ||||| |||||| ||| Sbjct 275746 AGAGTTCGTCCGTCCTCGAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAGGG 275687 Query 16829 ACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTT 16888 | |||||||| || ||||| ||| || | | | ||||| | |||| Sbjct 275686 ATTCCCTCTTTATCCTGAATTTTGGCCTTGACGTTATCGATTGTGTCAGAGCTCTCCACC 275627 Query 16889 TCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || | |||||| || ||||| || || |||||||| || || ||||| Sbjct 275626 TCGAGGGTGATCGTCTTTCCCGTTAGGGTTTTGACGAATATTTGCAT 275580 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || || || || | || |||| || || || |||||||| || ||||||||||| ||| Sbjct 276034 CCACCACGGAGACGCAACACCAAGTGAAGTGTAGACTCCTTCTGGATGTTGTAGTCAGCC 275975 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | ||| || |||| || | || || || || | || |||| ||| || ||| ||| Sbjct 275974 AATGTTCTGCCGTCTTCAAGCTGCTTTCCGGCGAAGATCAGCCTCTGCTGATCCGGAGGA 275915 Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | ||| |||||||| || || || |||||| | | | | ||||| | |||| Sbjct 275914 ATGCCTTCTTTGTCCTGGATCTTGGC--CTTCACGTTGTCAATGGTGTCCGAGCTCTCCA 275857 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 |||| ||| ||||| || || |||| ||||| || || |||||||| Sbjct 275856 CCTCCAGGGTAATGGTCTTGCCCGTCAAGGTTTTAACGAAGATCTGCAT 275808 Score = 87.8 bits (96), Expect = 1e-12 Identities = 149/214 (70%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || |||| ||| || || |||||||| || |||||||||||||||| || | ||| Sbjct 276475 AGAACCAAATGAAGAGTCGACTCCTTCTGGATGTTGTAGTCGGCCAATGTGCGACCATCC 276416 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC- 16842 || | ||||| || || | || || ||||| |||||| ||| | || || ||||| Sbjct 276415 TCAAGCTGTTTCCCAGCGAAGATGAGACGCTGCTGGTCCGGAGGGATCCCTTCCTTGTCT 276356 Query 16843 -GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGG 16901 || ||||| |||||| | | | ||||| | ||| |||| ||||||| Sbjct 276355 TGGATCTTTGC--CTTCACGTTATCAATCGTGTCCGAGCTCTCAACCTCCAGAGTGATGG 276298 Query 16902 TTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 | || ||||||| || || || ||||||||||| Sbjct 276297 TCTTACCGGTCAATGTCTTCACGAAAATCTGCAT 276264 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 405054586316320