Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thlaspi_20arvense_20[genbank_20GCA_5F000956625.1_202015-03-19] 6,768 sequences; 343,012,389 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq146 134 2e-26 seq2 111 2e-19 seq874 82.4 1e-10 >seq146 Length=264749 Score = 134 bits (148), Expect = 2e-26 Identities = 408/614 (66%), Gaps = 25/614 (4%) Strand=Plus/Plus Query 32655 ATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAAC 32714 |||||||| |||||||||||||| || || ||||||| || ||||||||||| || Sbjct 120984 ATCAAACAAGCGAAATCGCAGTGAAGGCCTTCGTCTCGCGAGATCAATTCGTTGGAGAAA 121043 Query 32715 GTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGAT-CCAGA 32773 ||||| || ||||||| || || || || ||||| || || || ||| | | | || || Sbjct 121044 GTGAGCCCAGGCATTAAACCTCGTTTCTTCAGCCAGAAAATCGA-GCAGAAGCTACCGGA 121102 Query 32774 AAAGAAAATTCCTTCTACTGCCGC-AAAGGCA--ATAAGTCTCTCTCCATAACCGGCGCT 32830 ||||| || ||||| || || |||| || ||| || || | | || || Sbjct 121103 GAAGAAGATACCTTCGACGCAAGCGAAAGCCACGATACGT---TCAGCGAA----GCTCT 121155 Query 32831 GTCAT--GT--ATCCACTTTTGAGCCCAATCG-GCCTTCTTTTTTACACAAGGCATTGTC 32885 | || || ||||| || |||| |||| ||| | || || || || || || Sbjct 121156 GAGATCCGTCGATCCATTTCATCGCCC-ATCGCGCCATTTTCGCGACGCAGGGAATGGTT 121214 Query 32886 TCTATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAA 32945 || || || ||||||| | | | || || | ||||| | || ||||| | | Sbjct 121215 TCGATTGCGCGGAAGAGATGATCTCTCTCTTTGTTGTCTTTGATGTAGGTATCGAGAAGG 121274 Query 32946 AGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAGCATCTA 33005 ||||| ||||| || || ||||| || || || || || || |||||||||||| | | Sbjct 121275 AGACTGTACATCTCGGAGTGAATATTCTCGATCGCGATCTGGAATCCGTAGAAGGCACGA 121334 Query 33006 GCCTCGGTAATCTGTACTTCTGTACA-AAATCGTTCTGCTAAATTTTCATTCACTATTCC 33064 ||||||| | || || || | ||| || || | || ||| || || ||||| Sbjct 121335 GCCTCGGAGACTTGAACATC-GGACATGAACCGGGAAGATAGATTCTCCAGAACGATTCC 121393 Query 33065 GTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTC-TGGTGTTA 33123 |||| || || || || || | || || || | || | |||||| | || ||| Sbjct 121394 GTCAGATGCGGCGAAGAAAGCGAGGACGTGCTTGACGAAGTGCCGTTCGTCGTCGT-TTA 121452 Query 33124 G---TTTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATG 33180 | ||| | ||| || | ||| | ||||| ||| |||||||| | ||||| || | Sbjct 121453 GGGCTTTTTCCCAGTCGCGGTAATCCTGAGATAGATCGACTTCTTCGGCGGTCCAGAAAG 121512 Query 33181 ATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATAACAA 33240 | || || || || || ||||| | |||||| | | ||||| || || || ||| | Sbjct 121513 AAGCTTCGGCTTTCTTGTACATCTCCCAGATCTGTGGGTATTGGATCGGGAACATACAGA 121572 Query 33241 ATCTATTTGGATTT 33254 ||| || |||| || Sbjct 121573 ATCGATCTGGACTT 121586 >seq2 Length=2373158 Score = 111 bits (122), Expect = 2e-19 Identities = 147/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 63226 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 63285 |||||| ||||| | || | ||| || | ||| | || | ||||||||||| |||||| Sbjct 1333101 TCCTCCTTGATCAACATAGCGAGCAGTATCATTGAATACCCGCAACATTGGAACAATACC 1333160 Query 63286 ATTGGATGTACCATTGGTCCCTGAGATATAGCTTCCACTGGCACGAATATTACTAATTGA 63345 ||| |||| ||||| || || || || |||||| | ||||| || || |||||| Sbjct 1333161 ATTAGATGCTCCATTTGTGCCACGAATGTAACTTCCAGTTGCACGGATGTTGTGAATTGA 1333220 Query 63346 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGAT 63405 | || || ||||| ||| ||| ||| | || ||| ||| || |||||||| || Sbjct 1333221 AACGCCAATACCCCCAGCCGATTTGCTGATAACAGCACATTCTTTCAATGTATCATATAT 1333280 Query 63406 GCCCTCTATACTATCATCCATCAT 63429 ||||| || ||||||||| |||| Sbjct 1333281 TCCCTCGATGCTATCATCCTTCAT 1333304 >seq874 Length=86422 Score = 82.4 bits (90), Expect = 1e-10 Identities = 91/120 (76%), Gaps = 6/120 (5%) Strand=Plus/Plus Query 62557 GAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATT 62616 ||| ||||| || ||||| | ||||||||||||||||| |||||||| || | | | || Sbjct 38159 GAGGATAAAAGCATCTGCAAGACCTTGAACACCAATACCAATAGGTCTGTGACGCATGTT 38218 Query 62617 AGAGATTT---CAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATT 62673 || ||| ||| ||| | |||||| ||||| | |||||| || ||||||||||| Sbjct 38219 TGACGTTTTGGCAGTTTC---CACAGGATAGTAATTCACATCTATGATCTTATTGAGATT 38275 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633578394732800