Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thlaspi_20arvense_20[genbank_20GCA_5F000956625.1_202015-03-19] 6,768 sequences; 343,012,389 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq49 136 3e-27 seq65 116 3e-21 seq130 114 1e-20 seq442 113 4e-20 seq73 84.2 2e-11 >seq49 Length=794425 Score = 136 bits (150), Expect = 3e-27 Identities = 170/230 (74%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| || || | || || ||| ||||||| | ||||| ||| || Sbjct 170922 ATGCAGATCTTTGTTAAAACCCTTACAGGCAAAACCATCACCCTAGAAGTTGAGAGCTCG 170863 Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 ||||||||||| || || | ||||| | ||| ||||| ||||||||||| || ||| Sbjct 170862 GACACTATCGA--CAATGTCAAGGCAAAGATTCAG-GACAAGGAAGGGATTCCTCCGGAC 170806 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 || ||| || |||| || || ||||| || | ||||||| || ||| | | |||||| Sbjct 170805 CAGCAGAGGCTTATCTTCGCAGGCAAGCAGCTTGAAGATGGCCGAACTCTTGCAGATTAC 170746 Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 ||||| || |||||||| || || || || || || ||| | |||||||| Sbjct 170745 AATATCCAGAAAGAATCAACCCTGCACTTGGTTCTTAGGTTGAGAGGAGG 170696 Score = 129 bits (142), Expect = 5e-25 Identities = 154/206 (75%), Gaps = 6/206 (3%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| |||||||| ||||| | ||||||||| |||| ||| | ||||||||| || Sbjct 170238 ATGCAGATATTTGTCAAGACCCTTACCGGTAAAACCATAACATTGGAAGTGGAGAGCTCA 170179 Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 ||||| ||||| || || |||| || | ||| ||||| ||||| || || || || Sbjct 170178 GACACAATCGA--CAATGTTAAAGCGAAGATTCAA-GACAAGGAAGGAATCCCTCCGGAT 170122 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 |||||| | | || || ||||||||||| |||| |||| ||||||| | | |||||| Sbjct 170121 CAACAGAGACTCATCTTCGCCGGCAAACAGCTAGAGGATGGTCGCACTCTTGCTGATTAC 170062 Query 25176 AATATTCAAAAAGAATCCACGCTACA 25201 || || || || || || ||||| || Sbjct 170061 AACATACAGAAGGAGTCAACGCTTCA 170036 Score = 125 bits (138), Expect = 6e-24 Identities = 152/205 (74%), Gaps = 4/205 (2%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| |||||||| ||||||||||| || || ||||||| | || || ||| ||| Sbjct 170010 ATGCAGATATTTGTCAAGACTTTGACGGGAAAGACCATCACTCTTGAGGTCGAGAGCTCT 169951 Query 25059 GACACTATCGAGTCACTG--AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116 || || || || || || ||| || ||| ||||| |||||||| |||||||||| Sbjct 169950 GATACGATTGA--CAATGTCAAGGCCAAGATCCAGGACAAGGAAGGGATCCCACCTGACC 169893 Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACA 25176 | ||| || | || |||||||| || || | ||||||| ||| ||| | | ||||||| Sbjct 169892 AGCAGAGGCTAATATTTGCCGGGAAGCAGCTTGAAGATGGTCGGACTCTAGCGGATTACA 169833 Query 25177 ATATTCAAAAAGAATCCACGCTACA 25201 | ||||| ||||| || || || || Sbjct 169832 ACATTCAGAAAGAGTCGACACTTCA 169808 Score = 123 bits (136), Expect = 2e-23 Identities = 167/230 (73%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || || || | || || ||| ||||||| | ||||| ||| || Sbjct 170694 ATGCAGATCTTCGTCAAAACCCTCACTGGCAAAACCATCACCCTAGAAGTTGAGAGCTCA 170635 Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 ||||| ||||| || || |||| || | ||| ||||| |||||||| || || ||| Sbjct 170634 GACACAATCGA--CAATGTTAAAGCTAAGATTCAA-GACAAGGAAGGGATCCCTCCGGAC 170578 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 |||||| | | || || || |||||||| | ||||||| |||||| | | |||||| Sbjct 170577 CAACAGAGACTCATCTTCGCAGGCAAACAGCTTGAAGATGGCCGCACTCTCGCTGATTAC 170518 Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 ||||| || ||||| || || || || || || || ||| | |||||||| Sbjct 170517 AATATCCAGAAAGAGTCAACCCTGCACTTGGTTCTTAGGTTGAGAGGAGG 170468 Score = 123 bits (136), Expect = 2e-23 Identities = 167/230 (73%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| ||||| || || | || || ||| ||||||| | ||||| ||| || Sbjct 171150 ATGCAAATTTTTGTTAAAACCCTCACTGGCAAAACCATCACCCTAGAAGTTGAGAGCTCG 171091 Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 || || ||||| || || | || || | ||| || |||||||| || || || || Sbjct 171090 GATACCATCGA--CAATGTCAAGGCTAAGATTCAG-GATAAAGAAGGAATCCCTCCGGAT 171034 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 |||||| || | || |||||||| ||||| | || |||| || ||| ||| |||||| Sbjct 171033 CAACAGAGGCTGATCTTTGCCGGTAAACAGCTCGAGGATGGCCGTACTTTGGCTGATTAC 170974 Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 ||||| ||||| || || || || || || || || ||| |||||||||| Sbjct 170973 AATATCCAAAAGGAGTCAACCCTTCACTTGGTTCTTAGGTTAAGAGGAGG 170924 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| |||||| | || || || | || || |||| || || || Sbjct 171378 ATGCAGATCTTTGTTAAGACTCTTACAGGCAAGACGATAACCCTCGAGGTAGAAAGCTCG 171319 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| ||||| | ||| || ||| || |||||||| || || || ||||| Sbjct 171318 GACACCATCGACAACGTCAAGGCCAAGATCCAGGATAAAGAAGGAATCCCTCCCGACCAG 171259 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||| || | || |||||||| ||||| | || |||| || ||| ||| ||||||||| Sbjct 171258 CAGAGGCTCATCTTTGCCGGTAAACAGCTCGAGGATGGCCGAACTCTGGCTGATTACAAT 171199 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 || |||||||| || || || || || || || ||| | ||||| || Sbjct 171198 ATCCAAAAAGAGTCAACCCTTCACTTGGTTCTTAGGTTGAGAGGTGG 171152 >seq65 Length=625306 Score = 116 bits (128), Expect = 3e-21 Identities = 155/213 (73%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||| ||||||||||| ||||||| | || || ||| || Sbjct 276264 ATGCAGATTTTCGTGAAGACATTGACCGGTAAGACCATCACTCTGGAGGTTGAGAGCTCG 276323 Query 25059 GACACTATCGAGTCAC-TGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 ||||| || || | || ||||| ||| ||| ||||| |||||||| || || ||||| Sbjct 276324 GACACGATTGA-TAACGTGAAGGCAAAGATCCAAGACAAGGAAGGGATCCCTCCGGACCA 276382 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||||| | || || || || ||||| | || |||| |||||| ||| ||| ||||| Sbjct 276383 GCAGCGTCTCATCTTCGCTGGGAAACAGCTTGAGGATGGTCGCACATTGGCCGACTACAA 276442 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || || || || || || || ||||| || || Sbjct 276443 CATCCAGAAGGAGTCGACTCTTCATTTGGTTCT 276475 Score = 96.9 bits (106), Expect = 3e-15 Identities = 162/229 (71%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||||||||| || || || | || || || | ||||| |||| |||||| ||| Sbjct 275580 ATGCAAATATTCGTCAAAACCCTAACGGGAAAGACGATCACCCTCGAGGTGGAGAGCTCT 275639 Query 25059 GACACTATCGAGTCAC-TGAA-GCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116 ||||| ||||| | || | || || |||| ||| || ||||| || || || || |||| Sbjct 275640 GACACAATCGA-TAACGTCAAGGCCAAAATTCA-GGATAAAGAGGGAATCCCTCCGGACC 275697 Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACA 25176 | ||||| | || || ||||| || || | || || | || ||| | | || |||| Sbjct 275698 AGCAGCGTCTCATCTTCGCCGGAAAGCAGCTCGAGGACGGACGAACTCTTGCTGACTACA 275757 Query 25177 ATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 | ||||| || || || || || ||| |||| || ||||| | ||||| Sbjct 275758 ACATTCAGAAGGAGTCGACTCTTCATCTAGTTCTCAGGCTTCGTGGAGG 275806 >seq130 Length=298546 Score = 114 bits (126), Expect = 1e-20 Identities = 141/189 (75%), Gaps = 3/189 (2%) Strand=Plus/Minus Query 25001 GCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCTGA 25060 ||| || || |||||||||||||| || || ||||||| | |||||||| || || Sbjct 143581 GCAGATTTTCGTAAAGACTTTGACAGGGAAGACCATCACCTTAGAAGTGGAAGACTCGGA 143522 Query 25061 CACTATCGAGTCAC-TGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAAC 25119 ||| ||||| | || ||||| || ||| || ||||| || ||||| || ||||| | Sbjct 143521 CACCATCGA-TAACGTGAAGGCCAAGATCCAGGATAAAGAGGGTATTCCGCCGGACCAGC 143463 Query 25120 AGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAATA 25179 || || | || || || |||||||| | || |||| |||||| ||||||||||||| | Sbjct 143462 AGAGGCTGATCTTCGCTGGCAAACAGCTTGAGGATGGTCGCACATTGGGCGATTACAACA 143403 Query 25180 TTCAAAAAG 25188 |||| ||| Sbjct 143402 -TCAAGAAG 143395 >seq442 Length=166222 Score = 113 bits (124), Expect = 4e-20 Identities = 158/219 (72%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || |||||| ||||||| || | ||||| |||| ||||| ||| Sbjct 80646 ATGCAGATCTTCGTTAAGACTCTGACCGGGAAGACTATCACCCTCGAGGTGGAAAGCTCT 80705 Query 25059 GACACTATCGAGT-CACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 ||||| ||||| | | |||| |||| || || || ||||||||||| || || || Sbjct 80706 GACACCATCGACAACGTTAAAGCCAAAATCCAG-GATAAGGAAGGGATTCCTCCGGATCA 80764 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||| || |||| || ||||| || || || ||||| | || ||| ||| ||| ||||| Sbjct 80765 GCAGAGGCTTATCTTCGCCGGAAAGCAGTTGGAAGACGGCCGAACTTTGGCCGACTACAA 80824 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCT 25216 || || || || || || || || || || || ||||| Sbjct 80825 CATCCAGAAGGAGTCGACCCTCCACTTGGTCCTCAGGCT 80863 Score = 107 bits (118), Expect = 2e-18 Identities = 151/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||| ||||| || || ||||||| | || || || || Sbjct 81330 ATGCAGATCTTCGTCAAGACCTTGACGGGAAAGACCATCACTTTGGAGGTTGAAAGCTCC 81389 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| || || ||||| |||||| ||||| || || || || || ||||| Sbjct 81390 GACACCATTGACAACGTGAAGGCCAAAATCCAGGACAAGGAGGGAATCCCTCCGGACCAG 81449 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||| || | || || |||||||| || | || |||| |||||| ||| |||||||||| Sbjct 81450 CAGAGGTTGATCTTCGCCGGCAAGCAGCTCGAGGATGGTCGCACCTTGGCCGATTACAAT 81509 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || || ||||| || ||||| || || || || Sbjct 81510 ATCCAGAAAGAGTCAACGCTTCACTTGGTCCT 81541 Score = 89.7 bits (98), Expect = 4e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| ||||| || || || | ||||| || | ||||| | ||||| ||| ||| Sbjct 81786 ATGCAGATATTCGTGAAAACCCTTACCGGCAAGACAATCACCCTTGAAGTCGAGAGCTCT 81845 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 |||||||| || ||||| || ||| ||||| ||||| || || || ||||| Sbjct 81846 GACACTATTGACAACGTGAAGGCGAAGATCCAGGACAAGGAAGGTATCCCTCCAGACCAG 81905 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||||| | ||||| || || || || | || |||| |||||| ||| || ||||| Sbjct 81906 CAGCGTCTCATTTTCGCTGGAAAGCAGCTTGAGGATGGTCGCACATTGGCTGACTACAAC 81965 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || || || || || || || || || || || Sbjct 81966 ATCCAGAAGGAGTCGACCCTTCACTTGGTCCT 81997 >seq73 Length=838620 Score = 84.2 bits (92), Expect = 2e-11 Identities = 100/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 25092 GACAAAGAAGGGATTCCACCTGACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAA 25151 ||||||||||| || ||||| || || || || | || |||||||| || ||| | || Sbjct 422935 GACAAAGAAGGTATACCACCAGATCAGCAAAGGCTGATATTTGCCGGGAAGCAACTGGAG 422994 Query 25152 GATGATCGCACTGTGGGCGATTACAATATTCAAAAAGAATCCACGCTACATTTAGTGCTA 25211 |||| || || ||| |||||||| || || ||||| || || || ||| | || | Sbjct 422995 GATGGACGAACACTGGCGGATTACAACATCCAGAAAGAGTCTACTCTTCATCTGGTCTTG 423054 Query 25212 AGGCTAAGAGGAGGAA 25227 ||||| ||||| |||| Sbjct 423055 AGGCTCAGAGGTGGAA 423070 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433292256939920