Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thlaspi_20arvense_20[genbank_20GCA_5F000956625.1_202015-03-19] 6,768 sequences; 343,012,389 total letters Query= NC_008296.2 Length=177300 Score E Sequences producing significant alignments: (Bits) Value seq161 601 4e-167 seq352 320 2e-82 seq768 131 2e-25 seq842 91.5 2e-13 >seq161 Length=278270 Score = 601 bits (666), Expect = 4e-167 Identities = 732/995 (74%), Gaps = 2/995 (0%) Strand=Plus/Minus Query 166053 CTTCTGCGAATGGGTTACCTCTACCAACAACCGTCTTTATGTTGGTTGGTTTGGCACACT 166112 |||||| | ||| | ||| || | ||||||||||| |||| |||||||| | Sbjct 90966 CTTCTGTAACTGGATAACCAGCACTGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTT 90907 Query 166113 GATGATTCCAACTCTGTTGGCAGCAACCATCTGTTTCATCGTCGCTTTCGTAGCGGCACC 166172 |||||| || || | ||| | ||||| | ||| || |||| ||| | || || || Sbjct 90906 GATGATCCCTACCTTATTGACCGCAACTTCCGTTTTTATTATCGCATTCATTGCTGCTCC 90847 Query 166173 TCCTGTCGATATCGATGGGATCCGTGAGCCCGTAGCAGGCTCTCTAATGTATGGTAACAA 166232 ||| || ||||| ||||| || ||||| || || | || ||||| | || || ||||| Sbjct 90846 TCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTTCTTTACGGAAACAA 90787 Query 166233 CATCATCTCTGGTGCTGTTGTCCCCTCCTCCAACGCAATTGGTCTTCACTTCTATCCCAT 166292 || || || ||||| || | || |||| || |||||| | || || || || || Sbjct 90786 TATTATTTCAGGTGCCATTATTCCTACCTCTGCAGCTATTGGTTTGCATTTTTACCCGAT 90727 Query 166293 CTGGGAAGCAGCATCACTTGATGAATGGCTTTATAACGGTGGTCCTTTCCAGCTCGTAGT 166352 ||||||||| ||||| ||||||||||||| || ||||||||||||| | || | || Sbjct 90726 CTGGGAAGCTGCATCCGTTGATGAATGGCTATACAACGGTGGTCCTTATGAACTAATTGT 90667 Query 166353 CTTCCACTTCCTCATCGGCATCTATGCCTACATGGGTCGTGAATGGGAATTGTCTTACCG 166412 | ||||| | | || | | || |||||||||||||||||| | || ||| Sbjct 90666 TCTACACTTTTTACTTGGTGTAGCTTGTTATATGGGTCGTGAATGGGAACTTAGTTTCCG 90607 Query 166413 CCTCGGTATGCGTCCTTGGATTTGCGTAGCATACTCTGCACCTGTTGCAGCAGCATCCGC 166472 || |||||||||||||||||| || ||||| || || ||||||||||| || | || Sbjct 90606 TCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGC 90547 Query 166473 AGTCTTCCTGGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGACGCAATGCCCCTGGGTAT 166532 || ||| || |||| || | |||||||| ||| ||||| | ||||| || || || Sbjct 90546 TGTTTTCTTGATCTACCCAATTGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAAT 90487 Query 166533 CAGTGGCACCTTCAACTACATGCTTGTCTTCCAAGCAGAGCACAACATCCTCATGCACCC 166592 | ||| || ||||||| ||| |||| ||||| || ||||||||||| || |||||||| Sbjct 90486 CTCTGGTACTTTCAACTTTATGATTGTATTCCAGGCTGAGCACAACATTCTTATGCACCC 90427 Query 166593 CTTCCATATGCTGGGTGTAGCAGGTGTATTCGGTGGGTCACTTTTCTCGGCAATGCACGG 166652 || || ||| | |||||||| ||||||||||| || || || || || ||||| || Sbjct 90426 ATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGTTCCCTATTTAGTGCTATGCATGG 90367 Query 166653 CAGTCTCGTTACTTCCTCGCTCG-TCCGTGAGACCACTGAAACTGAGTCTCAAAACTATG 166711 | || ||||| | | | | | | || ||||| |||| ||| ||| || | | Sbjct 90366 TTCCTTGGTAACTTC-TAGTTTGATTAGGGAAACCACAGAAAATGAATCTGCTAATGAAG 90308 Query 166712 GTTACAAGTTTGGTCAAGAAGAAGAGACCTACAACATCGTGGCTGCTCATGGTTACTTCG 166771 |||||| || |||||||||||||| || |||||||| || || ||||||||||| || | Sbjct 90307 GTTACAGATTCGGTCAAGAAGAAGAAACTTACAACATTGTAGCCGCTCATGGTTATTTTG 90248 Query 166772 GTCGCCTGATCTTCCAATACGCTTCCTTCAACAACTCTCGCTCGCTGCACTTCTTCCTCG 166831 | || ||||||||||||| ||| ||||||||||| || || | || |||||| | | Sbjct 90247 GCCGATTGATCTTCCAATATGCTAGTTTCAACAACTCCCGTTCTTTACATTTCTTCTTAG 90188 Query 166832 CAGCATGGCCTGTTGTCGGTATCTGGTTTACTGCTCTTGGTGTTAGCACCATGGCATTCA 166891 | || ||||| || || ||||| |||||||||||| | ||| ||||||| ||||| |||| Sbjct 90187 CGGCTTGGCCGGTAGTAGGTATTTGGTTTACTGCTTTAGGTATTAGCACTATGGCTTTCA 90128 Query 166892 ACCTCAACGGTTTCAACTTCAACCAGTCCATCATCGATGGTCAGGGTCGTGTGCTCAACA 166951 |||| || |||||||| |||||||| || | | ||| |||| || ||||| | || | Sbjct 90127 ACCTAAATGGTTTCAATTTCAACCAATCAGTAGTTGATAGTCAAGGACGTGTTATTAATA 90068 Query 166952 CTTGGGCAGATGTCCTCAACCGTGCTGGTCTGGGTATGGAAGTAATGCACGAGCGTAATG 167011 ||||||| ||| | | ||||||||| || ||||||||||| ||||| || ||||||| Sbjct 90067 CTTGGGCTGATATTATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATG 90008 Query 167012 CTCACAACTTCCCTCTGGATCTTGCTGCTGCTGAG 167046 ||||||| |||||||| || || ||||||| |||| Sbjct 90007 CTCACAATTTCCCTCTAGACCTAGCTGCTGTTGAG 89973 Score = 544 bits (602), Expect = 9e-150 Identities = 733/1017 (72%), Gaps = 8/1017 (1%) Strand=Plus/Plus Query 167300 TTTGATGTCCTGGATGACTGGCTTAAACGCGACCGCTTTGTCTTTGTGGGCTGGTCTGGA 167359 |||||| | ||||||||||| | | |||||||| || ||||| || |||||||| Sbjct 122082 TTTGATATTATGGATGACTGGTTACGGAGGGACCGCTTCGTTTTTGTAGGTTGGTCTGGT 122141 Query 167360 TTACTTCTTTTTCCCACTGCTTATCTGGCAATTGGTGGCTGGCTTACTGGCACGACGTTT 167419 || | || ||||| ||| ||| | || | || || ||| | || || || || ||| Sbjct 122142 CTATTGCTCTTTCCTTGTGCCTATTTCGCTTTAGGGGGTTGGTTCACAGGTACAACCTTT 122201 Query 167420 GTTACGAGCTGGTATACCCACGGGTTGGC--GT--CTAGTTACCTTGAGGGTGCTAATTT 167475 || || |||||||| || || ||||| || ||| ||| ||| ||| ||||| Sbjct 122202 GTAACTTCATGGTATACTCATGGATTGGCCAGTTCCTATTTAGA---AGGTTGC-AATTT 122257 Query 167476 TCTCACGGCAGCAGTGTCAACTCCTGCTGACGCTATGGGTCATTCTCTTCTTCTACTTTG 167535 | | || || ||||| || ||||||||| | | | | |||||| | | |||| || Sbjct 122258 TTTAACCGCTGCAGTTTCTACTCCTGCTAATAGTTTAGCGCATTCTTTGTTGTTACTGTG 122317 Query 167536 GGGTCCTGAGTCTCAGGGGGATTTCATCAGGTGGTGCCAGCTTGGGGGACTCTGGGCTTT 167595 ||||||||| | || || ||||| | | ||||| || | || || || |||||||| Sbjct 122318 GGGTCCTGAAGCACAAGGAGATTTTACTCGTTGGTGTCAATTAGGTGGTCTATGGGCTTT 122377 Query 167596 TGTGGCGCTCCACGGAGCCTTTGCTCTCATAGGATTTATGCTTCGGCAATTTGAGATAAG 167655 ||| || |||||||| || || || | ||||| |||||| | || |||||||| | Sbjct 122378 TGTTGCTCTCCACGGCGCTTTCGCATTAATAGGTTTTATGTTACGTCAATTTGAACTTGC 122437 Query 167656 TAGACTAGTAGGTATCCGTCCTTACAATGCGATTGCTTTTTCTGGTCCGATTGCTGTCTT 167715 || || | || ||||| ||||| || || || |||||||| |||||||| || Sbjct 122438 CCGATCTGTTCAATTGCGACCTTATAATGCAATCGCATTCTCTGGTCCAATTGCTGTTTT 122497 Query 167716 TGTGTCTGTTTTTCTCATCTATCCTCTCGGACAGTCCAGTTGGTTCTTTGCACCGTCGTT 167775 ||| ||||| || || || ||||| || || || || ||||||||||||| || || Sbjct 122498 TGTTTCTGTCTTCCTAATTTATCCACTAGGTCAATCTGGTTGGTTCTTTGCGCCTAGTTT 122557 Query 167776 TGGTGTTGCAGCGATATTTAGATTCCTACTATTCCTACAGGGTTTCCATAACTGGACGCT 167835 |||||| || || |||||| ||||| | || || | || || || ||||| ||||| | Sbjct 122558 TGGTGTAGCGGCTATATTTCGATTCATCCTCTTTTTCCAAGGGTTTCATAATTGGACATT 122617 Query 167836 CAACCCTTTCCATATGATGGGAGTTGCTGGTATCCTAGGCGGTGCATTGCTTTCTGCAAT 167895 ||||| || |||||||||||||| || || | || |||| || |||| | || || Sbjct 122618 GAACCCGTTTCATATGATGGGAGTCGCCGGCGTACTGGGCGCGGCTCTGCTATGCGCTAT 122677 Query 167896 CCATGGTGTTACAGTAGAGAATACTCTGTATGAAGATGGTGAGCAAGCAAACACTTTCAA 167955 ||||||| ||| ||||| |||||| | | |||||||||||| ||||| || ||| Sbjct 122678 TCATGGTGCTACTGTAGAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACATTCCG 122737 Query 167956 AGCATTTGATACGACTCAGGAAGAGGAAACTTATTCCATGGTCACTGCTAACCGATTCTG 168015 || ||| | | ||||| | || ||||||||||| |||||||| |||||||| || || Sbjct 122738 TGCTTTTAACCCAACTCAAGCCGAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTG 122797 Query 168016 GTCTCAAATTTTTGGTATTGCTTTCAGCAATAAGCGTTGGTTGCACTTCTTTATGCTTTT 168075 ||| ||||| ||||| ||||||| |||||| |||||||| || ||||||||| | || Sbjct 122798 GTCACAAATCTTTGGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATT 122857 Query 168076 CGTTCCTGTCATGGGACTTTGGACAAGTTCTATTGGTATCATCGGTCTCGCACTTAATCT 168135 || || || | || | |||| ||| || |||| | ||||||| || | || || Sbjct 122858 TGTACCGGTAACTGGTTTATGGATGAGTGCTCTTGGAGTAGTCGGTCTAGCTTTGAACCT 122917 Query 168136 TCGTGCTTATGACTTTGTGTCTCAGGAAGTTAGAGCAGCAGAGGATCCAGAGTTTGAAAC 168195 ||||| |||||||| || || |||||| | | ||||| || |||||||| ||||| || Sbjct 122918 ACGTGCCTATGACTTCGTTTCCCAGGAAATCCGTGCAGCGGAAGATCCAGAATTTGAGAC 122977 Query 168196 TTTCTATACGAAAAACATCCTCCTCAATGAAGGACTCCGTGCCTGGATGGCTCCAGTAGA 168255 ||||||||| ||||| || || | || ||||| | ||||| |||||||| | ||| Sbjct 122978 TTTCTATACTAAAAATATTCTTTTAAACGAAGGTATTCGTGCTTGGATGGCGGCTCAAGA 123037 Query 168256 CCAACCACATGAAAACTTTGTATTCCCAGAAGAAGTATTGCCAAGAGGCAACGCTCT 168312 || || ||||||||| || ||||||| || || || | ||| | || |||||||| Sbjct 123038 TCAGCCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTACCACGTGGAAACGCTCT 123094 >seq352 Length=147189 Score = 320 bits (354), Expect = 2e-82 Identities = 364/487 (75%), Gaps = 15/487 (3%) Strand=Plus/Minus Query 166561 TTCCAAGCAGAGCACAACATCCTCATGCACCCCTTCCATATGCTGGGTGTAGCAGGTGTA 166620 ||||| || ||||||||||| || |||||||| || || ||| | |||||||| |||||| Sbjct 89326 TTCCAGGCTGAGCACAACATTCTTATGCACCCATTTCACATGTTAGGTGTAGCTGGTGTA 89267 Query 166621 TTCGGTGGGTCACTTTTCTCGGCAATGCACGGCAGTCTCGTTACTTCCTCGCTCG-TCCG 166679 || || || || || || || ||||| || | || |||| | | | | || | Sbjct 89266 TTTGGCGGCTCCCTATTTAGTGCTATGCATGGTTCCTTGGTAACTTA-TAGTTTGATCAG 89208 Query 166680 TGAGACCACTGAAACTGAGTCTCAAAACTATGGTTACAAGTTTGGTCAAGAAGAAGAGAC 166739 || ||||| |||| ||| ||| || | ||||||| || |||||||||||||| || Sbjct 89207 GGAAACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATTCGGTCAAGAAGAAGAAAC 89148 Query 166740 CTACAACATCGTGGCTGCTCATGGTTACTTCGGTCGCCTGATCTTCCAATACGCTTCCTT 166799 |||||||| || |||||||||||||| || || || ||||||||| | | Sbjct 89147 TTACAACATTGTAGCTGCTCATGGTTATTTTGGCCGATTGATCTTCCGTT---------T 89097 Query 166800 CAACAACTCTCGCTCGCTGCACTTCTTCCTCGCAGCATGGCCTGTTGTCGGTATCTGGTT 166859 |||||| ||||| || | || |||||| | || || ||||| || || ||||| ||||| Sbjct 89096 CAACAATTCTCGTTCTTTACATTTCTTCTTAGCGGCTTGGCCGGTAGTAGGTATTTGGTT 89037 Query 166860 TACTGCTCTTGGTGTTAGCACCATGGCATTCAACCTCAACGGTTTCAACTTCAACCAGTC 166919 ||||||| | ||| ||||||| ||||| |||||||| || |||||||| |||||||| || Sbjct 89036 TACTGCTTTAGGTATTAGCACTATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATC 88977 Query 166920 CATCATCGATGGTCAGGGTCGTGTGCTCAACACTTGGGCAGATGTCCTCAACCGTGCTGG 166979 | | ||| |||| |||| | || |||||||| ||| | | ||||||||| Sbjct 88976 AGTAGTTGATAGTCA----AGTGTTATTAATACTTGGGCTGATATTATTAACCGTGCTAA 88921 Query 166980 TCTGGGTATGGAAGTAATGCACGAGCGTAATGCTCACAACTTCCCTCTGGATCTTGCTGC 167039 | ||||||||||| ||||| || ||||||||||||||||||||||| ||||| ||||| Sbjct 88920 CTTTGGTATGGAAGTTATGCATGAACGTAATGCTCACAACTTCCCTCTAGATCTAGCTGC 88861 Query 167040 TGCTGAG 167046 || |||| Sbjct 88860 TGTTGAG 88854 >seq768 Length=145301 Score = 131 bits (144), Expect = 2e-25 Identities = 156/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 168101 AGTTCTATTGGTATCATCGGTCTCGCACTTAATCTTCGTGCTTATGACTTTGTGTCTCAG 168160 ||| || |||| | ||||||| || | || || ||||| |||||||| || || ||| Sbjct 42054 AGTGCTCTTGGAGTAGTCGGTCTAGCTTTGAACCTACGTGCCTATGACTTCGTTTCCCAG 42113 Query 168161 GAAGTTAGAGCAGCAGAGGATCCAGAGTTTGAAACTTTCTATACGAAAAACATCCTCCTC 168220 ||| || | ||||| || ||| ||| ||| ||||||||||||| ||||| || || | Sbjct 42114 GAACTTCGTGCAGCGGAAAATCTAGAATTTAAAACTTTCTATACTAAAAATATTCTTTTA 42173 Query 168221 AATGAAGGACTCCGTGCCTGGATGGCTCCAGTAGACCAACCACATGAAAACTTTGTATTC 168280 || ||||| | |||| |||||||| | ||| || || ||||||||| || ||||| Sbjct 42174 AACGAAGGTATTCGTGTTTGGATGGCGGCTCAAGATCAGCCTCATGAAAACCTTATATTC 42233 Query 168281 CCAGAAGAAGTATTGCCAAGAGGCAACGCTCT 168312 | || ||||| | ||| | || |||||||| Sbjct 42234 CTTGAGGAAGTTCTACCACGTGGAAACGCTCT 42265 >seq842 Length=174314 Score = 91.5 bits (100), Expect = 2e-13 Identities = 67/78 (86%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 166969 AACCGTGCTGGTCTGGGTATGGAAGTAATGCACGAGCGTAATGCTCACAACTTCCCTCTG 167028 ||||||||| | ||||||||||| ||||| || ||||||||||||||||||||||| Sbjct 148246 AACCGTGCTAACTTTGGTATGGAAGTTATGCATGAACGTAATGCTCACAACTTCCCTCTA 148187 Query 167029 GATCTTGCTGCTGCTGAG 167046 ||||| ||||||| |||| Sbjct 148186 GATCTAGCTGCTGTTGAG 148169 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 567184012172800