Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thlaspi_20arvense_20[genbank_20GCA_5F000956625.1_202015-03-19] 6,768 sequences; 343,012,389 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq146 192 7e-44 seq69 174 2e-38 seq162 98.7 1e-15 seq594 89.7 6e-13 seq122 89.7 6e-13 seq456 86.0 7e-12 seq73 86.0 7e-12 seq663 84.2 2e-11 seq240 84.2 2e-11 seq129 84.2 2e-11 seq46 84.2 2e-11 seq39 84.2 2e-11 seq10 84.2 2e-11 seq1 84.2 2e-11 seq3 82.4 9e-11 >seq146 Length=264749 Score = 192 bits (212), Expect = 7e-44 Identities = 521/775 (67%), Gaps = 22/775 (3%) Strand=Plus/Plus Query 92917 CAATAATCTATCAGCTACAAATTCTATGTACTGAGACATCAAATCACAATTCATTCCTAG 92976 || ||| | ||| || || ||||| ||||||||| ||||||||||| ||||| || | Sbjct 120815 CAGTAACCGATCCGCCACGAATTCGATGTACTGACTCATCAAATCACGGTTCATCCCAAC 120874 Query 92977 AAGACGTACA-GGTAGAGCGTCGGTCAAGAAATCTTTCTCGATTACAACGGCTTCTTTCA 93035 | ||| || || || |||||| || || ||| ||||||| | || || || | Sbjct 120875 CA-ACGCGCAAGGAAGCGCGTCGCACACAAACTCTCTCTCGATCTCGACCGCATCACGAA 120933 Query 93036 AGATTTCTATTACTCTACTATTTGGTGGTTTTTGTACGACATA-ATTGTACATTAAGCAC 93094 ||| | | |||| | | || | || || | ||| | | |||| || || || Sbjct 120934 CGATCGATTTCACTCGA-TCTTCGCTGAGCTTCGATCGAAGGAGACTGTAGATCAAACAA 120992 Query 93095 GCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAAACCT 93154 || || ||| || | ||||||||||| || ||||| || ||| ||| || | || Sbjct 120993 GCGAAATCGCAGTGAAGGCCTTCGTCTCGCGAGATCAATTCGTTGGAGAAAGTGAGCCCA 121052 Query 93155 GGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCA-AAACTACCAGaaaaaaaTAT 93213 || | | ||||||||||| ||||| || || | |||| || ||||| || || || || Sbjct 121053 GGCATTAAACCTCGTTTCTTCAGCCAGAAAATCG-AGCAGAAGCTACCGGAGAAGAAGAT 121111 Query 93214 ACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTGCTGAT 93273 |||||| ||| || || ||||| |||||||| || || | | || | | | ||| Sbjct 121112 ACCTTCGACGCAAGCGAAAGCCACGATACGTTCAGCGAAGCT--CTGAGAT-CCGTCGAT 121168 Query 93274 CCATTTTAAAGCCCAATCG-GCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGTTAA 93332 |||||| | |||| |||| || ||||| | || || | |||||||| ||| | Sbjct 121169 CCATTTCATCGCCC-ATCGCGCCATTTTCGCGACGCAGGGAATGGTTTCGATTGCGCGGA 121227 Query 93333 ATAGGTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAATACATTT 93392 | || | ||||| ||| | ||| ||||| ||||||| | ||| ||||| | Sbjct 121228 AGAGATGATCTCTCTCTTTGTTGTCTTTGATGTAGGTATCGAGAAGGAGACTGTACATCT 121287 Query 93393 CAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCT 93452 | || || | |||||| || || || |||||||||||||| | ||| || | || | Sbjct 121288 CGGAGTGAATATTCTCGATCGCGATCTGGAATCCGTAGAAGGCACGAGCCTCGGAGACTT 121347 Query 93453 GCACTTCTTGAGAAAATCTCTCTACG--AGATTTTCATTGACTATACCATCGGATGCTGC 93510 | || || || | | | | | | ||||| || || || || || ||||| || Sbjct 121348 GAACATC-GGACATGAAC-CGGGAAGATAGATTCTCCAGAACGATTCCGTCAGATGCGGC 121405 Query 93511 aaaaaaaGCCAATATATGCTTTATAAAATGTTTCTCATCATCTTTAAG---CTTATCCCA 93567 || ||||| | | ||||| | || || || || || || || || ||||| Sbjct 121406 GAAGAAAGCGAGGACGTGCTTGACGAAGTGCCGTTCGTCGTCGTTTAGGGCTTTTTCCCA 121465 Query 93568 ATCG-GATAGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGCTT 93626 ||| | || ||| | || ||||||||||||||| | ||||| || || ||||| |||| Sbjct 121466 GTCGCGGTA-ATCCTGAGATAGATCGACTTCTTCGGCGGTCCAGAAAGAAGCTTCGGCTT 121524 Query 93627 TTTTGTACATATCCCATATGTCTTGATATTGAATTGGAAATATGACA-AAACGAT 93680 | |||||||| ||||| || | | | ||||| || || || || ||| || |||| Sbjct 121525 TCTTGTACATCTCCCAGATCTGTGGGTATTGGATCGGGAACAT-ACAGAATCGAT 121578 >seq69 Length=847923 Score = 174 bits (192), Expect = 2e-38 Identities = 399/592 (67%), Gaps = 9/592 (2%) Strand=Plus/Minus Query 93081 TGTACATTAAGCACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGC 93140 |||| || | |||||| || ||| || || ||||||||||| || |||||||| ||| Sbjct 357041 TGTAGATGAGGCACGCGAAATCGCAGTGCAAGCCTTCGTCTCGAGAGATCAACTCGTTGG 356982 Query 93141 TGAATGTTAAACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCA-AAACTA 93199 ||| |||| || || | || || |||||||| ||||| || || | |||| || ||| Sbjct 356981 AGAAGGTTAGTCCCGGCATGAGCCCGCGTTTCTTCAGCCAGAAAATCG-AGCAGAAGCTA 356923 Query 93200 CCAGaaaaaaaTATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCG 93259 || || || || || ||||| ||| || || || || ||||| || || ||| | | Sbjct 356922 CCGGAGAAGAAGATGCCTTCGACGCAGGCGAAGGCGACGATACGCTCCGCGAAAGTCTGG 356863 Query 93260 GAATTACTGCTGATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTT 93319 || | | |||||| | | ||||| | || || ||| | ||||| | ||| Sbjct 356862 GA---TCCGTCGATCCACGTCATCGCCCACTGCGCCTTCTTCGCGACGCAAGGGATGGTT 356806 Query 93320 TCGATAGCGTTAAATAGGTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAAC 93379 ||||| ||| ||| || | |||| ||| | || ||||| || |||| | Sbjct 356805 TCGATTGCGCGAAACAGATGGTCTCTCTCCTTGTTGTCCTTGATGTAAGTGTCGAGGAGG 356746 Query 93380 AGAGAATACATTTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTA 93439 ||| ||||| || ||||||| ||||| || || || ||||| ||||||||| | Sbjct 356745 AGACTGTACATCTCGGAATGGATGTTCTCGATCGCGATCTGGAACCCGTAGAAAGCACGC 356686 Query 93440 GCTTCCGTGATCTGCACTTCTTGAGA-AAATCTCTCTACGAGATTTTCATTGACTATACC 93498 || |||| || || || || || | |||| ||||||| || || || || Sbjct 356685 GCCTCCGAGACTTGAACATC-GGACATGAATCGAGAAGCGAGATTCTCCAGAACGATTCC 356627 Query 93499 ATCGGATGCTGCaaaaaaaGCCAATATATGCTTTATAAAATGTTTCTCATCATCTTTAAG 93558 || || || || || || || | | || || || || || ||| | || || || Sbjct 356626 GTCTGAGGCGGCGAAGAAGGCGAGGACGTGTTTGATGAAGTGCCGCTCGCCGTCGTTGAG 356567 Query 93559 CTTATCCCAATCG-GATAGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATG 93617 || ||||| ||| || | || | || ||||||||||| || | ||||||||||||| Sbjct 356566 ATTCTCCCAGTCGCGACCG-TCCTGAGATAGATCGACTTCCTCCGCCGTCCAAAACGATG 356508 Query 93618 CTTCTGCTTTTTTGTACATATCCCATATGTCTTGATATTGAATTGGAAATAT 93669 |||| || || |||||||| ||||| || | | | || ||||| || || || Sbjct 356507 CTTCGGCCTTCTTGTACATCTCCCAGATCTGTGGGTAGTGAATCGGGAACAT 356456 >seq162 Length=412961 Score = 98.7 bits (108), Expect = 1e-15 Identities = 81/96 (84%), Gaps = 6/96 (6%) Strand=Plus/Minus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCG---GGAGC 126322 |||||| ||||||||||||||||||||||||| | ||| |||||| | ||| ||||| Sbjct 24504 GTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CTTCGAAAGGAGC 24447 Query 126323 GTGGGTTCGAACCCCACACCTGACAAATTAT-TATT 126357 |||||||| |||||||| ||||||| |||| |||| Sbjct 24446 GTGGGTTCAAACCCCACTTCTGACAATTTATATATT 24411 >seq594 Length=117669 Score = 89.7 bits (98), Expect = 6e-13 Identities = 77/94 (82%), Gaps = 6/94 (6%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTC----GGGA 126320 ||||||| ||||||||||||| ||||||||||| | ||| |||||| |||| | | Sbjct 95629 AGTCAGGATGGCCGAGTGGTCCAAGGCGCCAGACTCAAGTTCTGGT--CCTCGAAAGAGG 95686 Query 126321 GCGTGGGTTCGAACCCCACACCTGACAAATTATT 126354 |||||||||| |||||||| |||||| |||||| Sbjct 95687 GCGTGGGTTCAAACCCCACTTCTGACATATTATT 95720 >seq122 Length=353245 Score = 89.7 bits (98), Expect = 6e-13 Identities = 84/106 (79%), Gaps = 6/106 (6%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTC----GGGA 126320 ||||||| ||||||||||||| ||||||||||| | ||| |||||| |||| | | Sbjct 255231 AGTCAGGATGGCCGAGTGGTCCAAGGCGCCAGACTCAAGTTCTGGT--CCTCGAAAGAGG 255174 Query 126321 GCGTGGGTTCGAACCCCACACCTGACAAATTATTATTGGAATTTTT 126366 |||||||||| |||||||| ||||||| ||| | || | ||||| Sbjct 255173 GCGTGGGTTCAAACCCCACTTCTGACAATTTACTTTTACATTTTTT 255128 >seq456 Length=135213 Score = 86.0 bits (94), Expect = 7e-12 Identities = 72/87 (83%), Gaps = 6/87 (7%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTC----GGGA 126320 ||||||| ||||||||||||||||||||||||| | ||| |||||| |||| ||| Sbjct 43745 AGTCAGGGTGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CCTCGTGAGGGG 43688 Query 126321 GCGTGGGTTCGAACCCCACACCTGACA 126347 |||||||||| || ||||| |||||| Sbjct 43687 GCGTGGGTTCAAATCCCACTTCTGACA 43661 >seq73 Length=838620 Score = 86.0 bits (94), Expect = 7e-12 Identities = 76/94 (81%), Gaps = 2/94 (2%) Strand=Plus/Plus Query 126263 ACAGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGG--TTCCCTCGGGA 126320 ||||||||| ||||||||||||||||||||||||| | ||| ||||| ||| | | Sbjct 168327 ACAGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCTTCGAAAGAGG 168386 Query 126321 GCGTGGGTTCGAACCCCACACCTGACAAATTATT 126354 |||||||||| || ||||| |||||| ||| || Sbjct 168387 GCGTGGGTTCAAATCCCACTTCTGACATATTTTT 168420 >seq663 Length=99544 Score = 84.2 bits (92), Expect = 2e-11 Identities = 69/83 (83%), Gaps = 2/83 (2%) Strand=Plus/Plus Query 126268 CAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGTGGG 126327 ||| |||||||||||||||||||||||||||||| | |||||| || | ||||||| Sbjct 39712 CAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGTGGG 39769 Query 126328 TTCGAACCCCACACCTGACAAAT 126350 ||| || |||||| ||| ||||| Sbjct 39770 TTCAAATCCCACAGCTGTCAAAT 39792 >seq240 Length=299127 Score = 84.2 bits (92), Expect = 2e-11 Identities = 72/88 (82%), Gaps = 6/88 (7%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTC----GGGA 126320 ||||||| ||||||||||||||||||||||||| | ||| |||||| |||| | | Sbjct 247064 AGTCAGGGTGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CCTCGAAAGAGG 247007 Query 126321 GCGTGGGTTCGAACCCCACACCTGACAA 126348 |||||||||| || ||||| ||||||| Sbjct 247006 GCGTGGGTTCAAATCCCACTTCTGACAA 246979 >seq129 Length=361940 Score = 84.2 bits (92), Expect = 2e-11 Identities = 70/85 (82%), Gaps = 2/85 (2%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCT--CGGGAGC 126322 ||||||| ||||||||||||||||||||||||| | ||| |||||| | | | | || Sbjct 241271 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCTCGTAACTGAGGC 241330 Query 126323 GTGGGTTCGAACCCCACACCTGACA 126347 |||||||| |||||||| |||||| Sbjct 241331 GTGGGTTCAAACCCCACTTCTGACA 241355 >seq46 Length=504745 Score = 84.2 bits (92), Expect = 2e-11 Identities = 69/83 (83%), Gaps = 2/83 (2%) Strand=Plus/Minus Query 126268 CAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGTGGG 126327 ||| |||||||||||||||||||||||||||||| | |||||| || | ||||||| Sbjct 63873 CAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGTGGG 63816 Query 126328 TTCGAACCCCACACCTGACAAAT 126350 ||| || |||||| ||| ||||| Sbjct 63815 TTCAAATCCCACAGCTGTCAAAT 63793 >seq39 Length=611640 Score = 84.2 bits (92), Expect = 2e-11 Identities = 82/104 (79%), Gaps = 4/104 (4%) Strand=Plus/Minus Query 126268 CAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGTGGG 126327 ||| |||||||||||||||||||||||||||||| | |||||| || | ||||||| Sbjct 266404 CAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGTGGG 266347 Query 126328 TTCGAACCCCACACCTG--ACAAATTATTATTGGAATTTTTGTT 126369 ||| || |||||| ||| |||| || || || | |||| ||| Sbjct 266346 TTCAAATCCCACAGCTGTCACAATTTCTTTTTCTATTTTTCGTT 266303 >seq10 Length=890060 Score = 84.2 bits (92), Expect = 2e-11 Identities = 71/85 (84%), Gaps = 2/85 (2%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGT-TCCCTCGGGA-GC 126322 ||||||| ||||||||||||| ||||||||||| | ||| |||||| ||| ||| || Sbjct 614615 AGTCAGGATGGCCGAGTGGTCCAAGGCGCCAGACTCAAGTTCTGGTCTCCGAAAGGAGGC 614556 Query 126323 GTGGGTTCGAACCCCACACCTGACA 126347 |||||||| |||||||| |||||| Sbjct 614555 GTGGGTTCAAACCCCACTTCTGACA 614531 >seq1 Length=1953584 Score = 84.2 bits (92), Expect = 2e-11 Identities = 72/87 (83%), Gaps = 3/87 (3%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGT 126324 || ||| |||||||||||||||||||||||||||||| | |||||| || | |||| Sbjct 65867 AGACAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGT 65810 Query 126325 GGGTTCGAA-CCCCACACCTGACAAAT 126350 |||||| || ||||||| ||| ||||| Sbjct 65809 GGGTTCAAATCCCCACAGCTGTCAAAT 65783 Score = 84.2 bits (92), Expect = 2e-11 Identities = 78/97 (80%), Gaps = 8/97 (8%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTC----GGGA 126320 ||||||| ||||||||||||| ||||||||||| | ||| |||||| |||| | | Sbjct 745486 AGTCAGGATGGCCGAGTGGTCCAAGGCGCCAGACTCAAGTTCTGGT--CCTCGAAAGAGG 745429 Query 126321 GCGTGGGTTCGAACCCCACACCTGACAAATTATTATT 126357 |||||||||| |||||||| ||||| |||||| || Sbjct 745428 GCGTGGGTTCAAACCCCACTTCTGAC--ATTATTTTT 745394 >seq3 Length=1676586 Score = 82.4 bits (90), Expect = 9e-11 Identities = 72/89 (81%), Gaps = 2/89 (2%) Strand=Plus/Minus Query 126269 AGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGTGGGT 126328 || |||||||||||||||||||||||||||||| | |||||| || | |||||||| Sbjct 461184 AGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGTGGGT 461127 Query 126329 TCGAACCCCACACCTGACAAATTATTATT 126357 || || |||||| ||| || | | ||||| Sbjct 461126 TCAAATCCCACAGCTGTCAGAATTTTATT 461098 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556813689576320