Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thlaspi_20arvense_20[genbank_20GCA_5F000956625.1_202015-03-19] 6,768 sequences; 343,012,389 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq69 132 1e-25 seq53 102 2e-16 seq216 91.5 3e-13 seq10 91.5 3e-13 seq1003 87.8 4e-12 seq175 87.8 4e-12 seq165 87.8 4e-12 seq114 87.8 4e-12 seq80 87.8 4e-12 seq71 87.8 4e-12 seq32 87.8 4e-12 seq28 87.8 4e-12 seq15 87.8 4e-12 seq1778 86.0 1e-11 seq827 86.0 1e-11 seq92 86.0 1e-11 seq758 84.2 4e-11 >seq69 Length=847923 Score = 132 bits (146), Expect = 1e-25 Identities = 531/823 (65%), Gaps = 25/823 (3%) Strand=Plus/Minus Query 251563 TCGAAGAAATTAGACTTGCCCTCCAGAGAGATTAGCTCCATGAAGTCGAAGGGGTTTGTG 251622 |||||||| || | || |||| || ||||||| |||||| | || || || || | Sbjct 357297 TCGAAGAAGTTTGTTTTACCCTGAAGCGAGATTAACTCCATCCAATCAAACGGATTCGCC 357238 Query 251623 GCATTGTACTGCTTGGGATGGCCAAGTGCTACGAAGATGCGGTCTGCCACAAACTCCAGA 251682 || |||| ||| | ||||| || | || | | || || ||||| || | | Sbjct 357237 ACACCGTACACCTTCCCGTACCCAAGCGCACCCAAAAGCCTATCCGCAACAAATTCGATA 357178 Query 251683 TACTGTCCCATCAGTTCAGAGTTCATGCCAATCATACGA-CAAGGAATTGCCTCACAGAT 251741 ||||| | |||||| || |||||| || | || ||| || |||| || || || | Sbjct 357177 TACTGGCTCATCAGGTCCCGGTTCATCCCCACCA-ACGCGCAGGGAAGCGCGTCGCACAC 357119 Query 251742 GAATTCCTTTTCGTTGGCAACTGCCTCCTCCACAATTGCCTTCACCTGTGCCAGAGACAG 251801 || ||| | ||| | | || || || || || | |||||| | || || || Sbjct 357118 AAACTCCCTCTCGATCTCGACGGCGTCGCAGACGATCGACTTCACGCGCTCCTCCGAGAG 357059 Query 251802 CTTGTTCTCCAGCTTTGAGTACAGGAG-CTCGCCAAACTGTTGGTGCAGACCCTCGTCGC 251860 ||| || || | | ||| | ||| | ||| ||| | | |||| || ||||| | Sbjct 357058 CTTCGTCCTCAACAGAGTGTAGATGAGGCACGCGAAATCGCAG-TGCAAGCCTTCGTCTC 357000 Query 251861 GACTGATGAACTCGTTGGACAGACCCAGGCCAGGCATCACCCCACGGTTCCTGAGCCAGA 251920 || ||| ||||||||||| | || || ||||| | ||| || ||| | ||||||| Sbjct 356999 GAGAGATCAACTCGTTGGAGAAGGTTAGTCCCGGCATGAGCCCGCGTTTCTTCAGCCAGA 356940 Query 251921 AGATTGCGCAAAAGGATCCAGAGAACAGCAGACCCTCGACACACACCCATGCAACAAGGC 251980 | || | ||| ||| || ||||| | | || ||||| || | | || || | | Sbjct 356939 AAATCGAGCAGAAGCTACCGGAGAAGAAGATGCCTTCGACGCAGGCGAAGGCGACGATAC 356880 Query 251981 GCTCAGCAAACGACTTG--TCCTGCGACAAGAACTTCTGTGCCCA-TGCTGCCTTCTTTC 252037 |||| || || | || | ||| || | || || ||||| ||| |||||||| Sbjct 356879 GCTCCGCGAAAGTCTGGGATCCGTCG--ATCCACGTCATCGCCCACTGC-GCCTTCTTCG 356823 Query 252038 CAACCGCGGGGATTGTTTCGATTGCATCAAAGAGAGAGTTCCGCTCGGCATCGTCCTCGA 252097 | || ||||| ||||||||||| ||| ||| || | ||| | ||||| || Sbjct 356822 CGACGCAAGGGATGGTTTCGATTGCGCGAAACAGATGGTCTCTCTCCTTGTTGTCCTTGA 356763 Query 252098 TGAGCGCATCAAGCAGGAGAGAGTACATCTCCGAATGGATGGATTCGTTGAACATCTGGT 252157 || | || || |||||| ||||||||| ||||||||| ||| | |||||| Sbjct 356762 TGTAAGTGTCGAGGAGGAGACTGTACATCTCGGAATGGATGTTCTCGATCGCGATCTGGA 356703 Query 252158 AAGCATAGAATAGACGCGCGGAAGGGTCGGTGACTT---CCGTGGAAA--AGTTG-TTTG 252211 | | ||||| |||||| || | ||||| | ||| | | | | | Sbjct 356702 ACCCGTAGAAAGCACGCGC------CTCCGAGACTTGAACATCGGACATGAATCGAGAAG 356649 Query 252212 CAATGTTCTCCATCACCATGCCATCGCTGCCTGCAAAGAAGCCAAGAATGGTCTTGATGA 252271 | | ||||||| || || || || | | || |||||| | || | | ||||||| Sbjct 356648 CGAGATTCTCCAGAACGATTCCGTCTGAGGCGGCGAAGAAGGCGAGGACGTGTTTGATGA 356589 Query 252272 AGTGACGCTCATCGTCGTTGAGCTTGTCACGCCAGTCGGCAATGTCCTGATTCAGAGGAA 252331 |||| ||||| |||||||||| || || ||||||| | ||||||| ||| | Sbjct 356588 AGTGCCGCTCGCCGTCGTTGAGATTCTC---CCAGTCGCGACCGTCCTGAGATAGATCGA 356532 Query 252332 CTTCTTCCACCGTCCAGAATGTGGACACCGCCTTCTTGTACAT 252374 |||| ||| ||||||| || | | | |||||||||||||| Sbjct 356531 CTTCCTCCGCCGTCCAAAACGATGCTTCGGCCTTCTTGTACAT 356489 >seq53 Length=463118 Score = 102 bits (112), Expect = 2e-16 Identities = 163/234 (70%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 218569 TCTATTCCCAGCGTGGTGGATGGCCTCAAGCCATCGCAGCGTAAGATCCTCTTTGCCGCA 218628 || ||||| | |||| ||||| || || || ||| | ||| | || ||| | Sbjct 164715 TCAATTCCTTCCATGGTTGATGGGCTTAAACCGGGTCAGAGGAAGGTTCTTTTTTGTTCG 164656 Query 218629 TTCAAGCGGAACCTGGTTCAAGAAATTAAGGTCGCTCAGTTTTCTGGTTATGTATCCGAA 218688 || ||| |||| | || | ||| ||||| || || || |||||||||||||| || Sbjct 164655 TTTAAGAGGAATTTCGTCAAGGAAGCCAAGGTTGCCCAATTCTCTGGTTATGTATCAGAG 164596 Query 218689 ATTTCTGGCTACCATCACGGTGAGCAGAGTCTGCAGGGTGCCATTGTAGGCATGGCACAG 218748 |||| || |||||||| ||||||||||| ||| |||| || || ||||| || Sbjct 164595 CACTCTGCTTATCATCACGGCGAGCAGAGTCTTGCTGGTACCATCGTCGGTATGGCCCAA 164536 Query 218749 GACTATGTGGGCAGTAACAACATGAACTTGCTGCTCCCCAACGGTCAGTTTGGT 218802 || ||||||||||| ||||| || || |||| | || ||||| |||||| Sbjct 164535 GATTATGTGGGCAGCAACAATATCAATCTGCTTCAACCGCTTGGTCAATTTGGT 164482 >seq216 Length=207792 Score = 91.5 bits (100), Expect = 3e-13 Identities = 61/68 (90%), Gaps = 0/68 (0%) Strand=Plus/Plus Query 142501 ATAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCG 142560 |||||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||| Sbjct 152764 ATAGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCG 152823 Query 142561 AGCCCCAC 142568 |||||||| Sbjct 152824 AGCCCCAC 152831 >seq10 Length=890060 Score = 91.5 bits (100), Expect = 3e-13 Identities = 62/70 (89%), Gaps = 0/70 (0%) Strand=Plus/Plus Query 142499 AGATAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTT 142558 || ||||||| ||||||||| |||||||||| || ||||||| || ||||||||||||| Sbjct 678127 AGTTAGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTT 678186 Query 142559 CGAGCCCCAC 142568 |||||||||| Sbjct 678187 CGAGCCCCAC 678196 >seq1003 Length=75097 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 24023 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 23964 Query 142563 CCCCAC 142568 |||||| Sbjct 23963 CCCCAC 23958 >seq175 Length=256150 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 63850 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 63791 Query 142563 CCCCAC 142568 |||||| Sbjct 63790 CCCCAC 63785 Score = 84.2 bits (92), Expect = 4e-11 Identities = 58/66 (88%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 64036 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 63977 Query 142563 CCCCAC 142568 ||||| Sbjct 63976 TCCCAC 63971 >seq165 Length=266828 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 139786 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 139845 Query 142563 CCCCAC 142568 |||||| Sbjct 139846 CCCCAC 139851 >seq114 Length=758912 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 331940 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 331881 Query 142563 CCCCAC 142568 |||||| Sbjct 331880 CCCCAC 331875 Score = 86.0 bits (94), Expect = 1e-11 Identities = 58/65 (89%), Gaps = 0/65 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||||| ||||||||| |||||||||| || ||||||| || |||||||||||||||||| Sbjct 331772 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 331713 Query 142564 CCCAC 142568 ||||| Sbjct 331712 CCCAC 331708 >seq80 Length=391348 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 17019 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 16960 Query 142563 CCCCAC 142568 |||||| Sbjct 16959 CCCCAC 16954 >seq71 Length=684923 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 296384 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 296325 Query 142563 CCCCAC 142568 |||||| Sbjct 296324 CCCCAC 296319 >seq32 Length=978364 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 420996 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 421055 Query 142563 CCCCAC 142568 |||||| Sbjct 421056 CCCCAC 421061 >seq28 Length=655156 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 221571 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 221630 Query 142563 CCCCAC 142568 |||||| Sbjct 221631 CCCCAC 221636 >seq15 Length=895683 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 487556 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 487497 Query 142563 CCCCAC 142568 |||||| Sbjct 487496 CCCCAC 487491 >seq1778 Length=44589 Score = 86.0 bits (94), Expect = 1e-11 Identities = 58/65 (89%), Gaps = 0/65 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||||| ||||||||| |||||||||| || ||||||| || |||||||||||||||||| Sbjct 22460 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 22519 Query 142564 CCCAC 142568 ||||| Sbjct 22520 CCCAC 22524 >seq827 Length=88997 Score = 86.0 bits (94), Expect = 1e-11 Identities = 58/65 (89%), Gaps = 0/65 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||||| ||||||||| |||||||||| || ||||||| || |||||||||||||||||| Sbjct 43200 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 43141 Query 142564 CCCAC 142568 ||||| Sbjct 43140 CCCAC 43136 >seq92 Length=357190 Score = 86.0 bits (94), Expect = 1e-11 Identities = 58/65 (89%), Gaps = 0/65 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||||| ||||||||| |||||||||| || ||||||| || |||||||||||||||||| Sbjct 357190 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 357131 Query 142564 CCCAC 142568 ||||| Sbjct 357130 CCCAC 357126 >seq758 Length=131392 Score = 84.2 bits (92), Expect = 4e-11 Identities = 58/66 (88%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| ||| |||||| || ||||||| || ||||||||||||||||| Sbjct 54201 AGCCCGTCTAGCTCAGTTGGTGGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 54260 Query 142563 CCCCAC 142568 |||||| Sbjct 54261 CCCCAC 54266 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027747671131888