Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thlaspi_20arvense_20[genbank_20GCA_5F000956625.1_202015-03-19] 6,768 sequences; 343,012,389 total letters Query= NC_008725.1 Length=111953 Score E Sequences producing significant alignments: (Bits) Value seq49 98.7 7e-16 seq466 84.2 2e-11 >seq49 Length=794425 Score = 98.7 bits (108), Expect = 7e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 |||||||| ||| ||||||| | || ||||||||||| ||| | ||| || | | Sbjct 171150 ATGCAAATTTTTGTTAAAACCCTCACTGGCAAAACCATCACCCTAGAAGTTGAGAGCTCG 171091 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || || | | | || | ||| || ||| |||||||| || | ||| | ||| Sbjct 171090 GATACCATCGACAATGTCAAGGCTAAGATTCAGGATAAAGAAGGAATCCCTCCGGATCAA 171031 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 ||||| || |||||||| || ||||| || || ||| ||| |||| ||||||||| Sbjct 171030 CAGAGGCTGATCTTTGCCGGTAAACAGCTCGAGGATGGCCGTACTTTGGCTGATTACAAT 170971 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGG 22060 || || ||||| || || ||||| |||| | | ||| ||||||| Sbjct 170970 ATCCAAAAGGAGTCAACCCTTCACTTGGTTCTTAGGTTAAGAGGAGG 170924 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 ||||| || ||| ||||||| | || ||||||||||| ||| | ||| || | | Sbjct 170922 ATGCAGATCTTTGTTAAAACCCTTACAGGCAAAACCATCACCCTAGAAGTTGAGAGCTCG 170863 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || || | | | || | ||| ||| ||| || || || || | ||| |||| Sbjct 170862 GACACTATCGACAATGTCAAGGCAAAGATTCAGGACAAGGAAGGGATTCCTCCGGACCAG 170803 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 ||||| |||||||| || ||||| || || |||||| |||| | || ||||||||| Sbjct 170802 CAGAGGCTTATCTTCGCAGGCAAGCAGCTTGAAGATGGCCGAACTCTTGCAGATTACAAT 170743 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGG-TATTACGTTTACGAGGAGG 22060 || ||||| ||||| || || || ||| | ||| ||| | ||||||| Sbjct 170742 ATCCAGAAAGAATCAACCCTGCACTTGGTTCTTAGGTTGA-GAGGAGG 170696 Score = 86.0 bits (94), Expect = 4e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 ||||| |||||| | || || | || || |||||||| || ||||| ||| | || Sbjct 170238 ATGCAGATATTTGTCAAGACCCTTACCGGTAAAACCATAACATTGGAAGTGGAGAGCTCA 170179 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || || | | | || |||| || ||| || || || || | ||| | ||| Sbjct 170178 GACACAATCGACAATGTTAAAGCGAAGATTCAAGACAAGGAAGGAATCCCTCCGGATCAA 170119 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 |||||||| ||||| || |||||||| ||||| ||| ||| | || |||||||| Sbjct 170118 CAGAGACTCATCTTCGCCGGCAAACAGCTAGAGGATGGTCGCACTCTTGCTGATTACAAC 170059 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGG 22060 || |||||||| || || ||||| | || || ||| | || || || Sbjct 170058 ATACAGAAGGAGTCAACGCTTCACCTTGTGTTGCGTCTTCGTGGTGG 170012 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 ||||| || || | ||||| | || ||||||||||| ||| | ||| || | || Sbjct 170694 ATGCAGATCTTCGTCAAAACCCTCACTGGCAAAACCATCACCCTAGAAGTTGAGAGCTCA 170635 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || || | | | || |||| || ||| || || || || | ||| ||||| Sbjct 170634 GACACAATCGACAATGTTAAAGCTAAGATTCAAGACAAGGAAGGGATCCCTCCGGACCAA 170575 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 |||||||| ||||| || |||||||| || |||||| ||| | || ||||||||| Sbjct 170574 CAGAGACTCATCTTCGCAGGCAAACAGCTTGAAGATGGCCGCACTCTCGCTGATTACAAT 170515 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGG-TATTACGTTTACGAGGAGG 22060 || ||||| || || || || || ||| | ||| ||| | ||||||| Sbjct 170514 ATCCAGAAAGAGTCAACCCTGCACTTGGTTCTTAGGTTGA-GAGGAGG 170468 >seq466 Length=125450 Score = 84.2 bits (92), Expect = 2e-11 Identities = 90/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 21927 GATAAAGAGGGTGTACCTGTAAACCAACAGAGACTTATCTTTGCTGGCAAACAACTAGAA 21986 || |||||||| |||| | ||||||||||| || |||||||| |||||||||||| Sbjct 78665 GACAAAGAGGGGATACCACCGGATCAACAGAGACTGATATTTGCTGGGAAACAACTAGAA 78606 Query 21987 GATTTAAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCATATGGTATT 22045 ||| || |||| |||||||| || ||||| || || |||||||| |||| || Sbjct 78605 GATGGTCGGACGCTGGCGGATTACAACATCCAGAAAGAGTCGACTCTTCACTTGGTCTT 78547 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 358095260075872