Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thlaspi_20arvense_20[genbank_20GCA_5F000956625.1_202015-03-19] 6,768 sequences; 343,012,389 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq69 190 4e-43 >seq69 Length=847923 Score = 190 bits (210), Expect = 4e-43 Identities = 405/601 (67%), Gaps = 8/601 (1%) Strand=Plus/Plus Query 42408 TTCCTCAAAAACATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTG 42467 ||| ||||| || | || ||||||||||||||||| ||||| || || ||||| || Sbjct 356588 TTCATCAAACACGTCCTCGCCTTCTTCGCCGCCTCAGACGGAATCGTTCTGGAGAATCTC 356647 Query 42468 GCCACCAGGTTCATGAAAGAGGTGCAGTACTTTGAGGCGCGCTGC-TTCTACGGCTTCCA 42526 || | | |||||| || || || || |||||||| ||| |||||||| ||||| Sbjct 356648 GCTTCTCGATTCATGTCCGATGTTCAAGTCTCGGAGGCGCG-TGCTTTCTACGGGTTCCA 356706 Query 42527 GATAGCCATAGAGAACGTGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTACATCCT 42586 ||| || || |||||| | || || ||| ||||| || ||| |||| |||||| Sbjct 356707 GATCGCGATCGAGAACATCCATTCCGAGATGTACAGTCTCCTCCTCGACACTTACATCAA 356766 Query 42587 GGATCCCGTCGAGCGTAACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAA 42646 ||| | ||| | || ||||| || || || || || || ||| || ||| Sbjct 356767 GGACAACAAGGAGAGAGACCATCTGTTTCGCGCAATCGAAACCATCCCTTGCGTCGCGAA 356826 Query 42647 GAAGGCGGACTGGGCGCTCAACTGGATCGAGAGTCCCGACGCAACGTTCGGCGAGAGGCT 42706 ||||||| | |||||| | | |||||||| | || | || |||| ||| | | Sbjct 356827 GAAGGCGCAGTGGGCGATGACGTGGATCGACGGATCCCA---GACTTTCGCGGAGCGTAT 356883 Query 42707 GGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTG 42766 || ||||| || |||||| |||||||||||||| || |||| ||| || ||||| Sbjct 356884 CGTCGCCTTCGCCTGCGTCGAAGGCATCTTCTTCTCCGGTAGCTTCTGCTCGATTTTCTG 356943 Query 42767 GCTCAAGCAGAAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGA 42826 ||| ||| | | | ||||| ||||| |||||||| ||||| | ||| | || Sbjct 356944 GCTGAAGAAACGCGGGCTCATGCCGGGACTAACCTTCTCCAACGAGTTGATCTCTCGAGA 357003 Query 42827 CGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACAAGCC 42886 ||| || |||| | || || || |||||| ||| | | | ||| |||| Sbjct 357004 CGAAGGCTTGCACTGCGATTTCGCGTGCCTC---ATCTACACTCTGTTGAGGACGAAGCT 357060 Query 42887 CTCGAAGGAGCGGGTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTCCT 42946 |||| ||||||| || | | ||| || || ||||| |||||||||| |||||| | Sbjct 357061 CTCGGAGGAGCGCGTGAAGTCGATCGTCTGCGACGCCGTCGAGATCGAGAGGGAGTTTGT 357120 Query 42947 CACGCAGTCGCTGCCCGTGTCCCTGGTCGGCATGAACCACGACCTCATGTGCAAGTACAT 43006 | |||| ||| | |||| || ||||||| ||||| ||| || |||| || Sbjct 357121 GTGCGACGCGCTTCCCTGCGCGTTGGTGGGGATGAACCGGGACCTGATGAGCCAGTATAT 357180 Query 43007 C 43007 | Sbjct 357181 C 357181 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944259308903680