Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thlaspi_20arvense_20[genbank_20GCA_5F000956625.1_202015-03-19] 6,768 sequences; 343,012,389 total letters Query= NC_009333.1 Length=137969 Score E Sequences producing significant alignments: (Bits) Value seq45 111 1e-19 >seq45 Length=496881 Score = 111 bits (122), Expect = 1e-19 Identities = 192/275 (70%), Gaps = 8/275 (3%) Strand=Plus/Minus Query 20246 ACATGAGCAAGCATATAAGTTAAGAGGGAATAGCTGGCAATGTTAAAAGGAACTCCCAAA 20305 || ||||| || || | || | |||||||| ||||||||| || || || || | | Sbjct 239294 ACGTGAGCGAGGATGCATGTAAGAAGGGAATATGAGGCAATGTTGAACGGTACACCAAGA 239235 Query 20306 CCCATGTCTCCCGACCTCTGATACAGCTGACAGGAAAGCTCACCGTCAGCTACATAAAAT 20365 ||||| || | |||| |||||||| ||||| |||||||| || | || ||||| || Sbjct 239234 CCCATATCAGCTGACCGCTGATACATTTGACATGAAAGCTCGCCATTTGCAACATAGAAC 239175 Query 20366 TGACATAACAAGTGACAGGGCGGAAGCGCCATCAACGACAAGTCCGCCGGGTTCCACGCA 20425 || |||| ||| || || ||||| ||||||| | | || | || ||||| || Sbjct 239174 TGTGCAAACATGTGGCATGGAGGAAGTGCCATCAGCTTAAGATCAGGAGGATTCCAAGCC 239115 Query 20426 CACATAATGATTCTTCTATCGTGCGGATTATTTTTTAT----TAAATCCACAATGTACGA 20481 |||| || || | || ||| | ||||| || || || | ||| ||| | || | Sbjct 239114 GACATTATAATCCGTCGATCATCAGGATTGTTCTTGATCTTGTTAATT-ACA-TCTA--A 239059 Query 20482 CAATTGGTCAAACCCCTGGCCTGTATAGTCAGCAT 20516 || || ||||| || ||||||||||| ||||||| Sbjct 239058 CAGCTGATCAAATCCTTGGCCTGTATAATCAGCAT 239024 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 441335459861120