Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thlaspi_20arvense_20[genbank_20GCA_5F000956625.1_202015-03-19] 6,768 sequences; 343,012,389 total letters Query= NC_009503.1 Length=124121 Score E Sequences producing significant alignments: (Bits) Value seq70 98.7 8e-16 seq73 96.9 3e-15 seq69 91.5 1e-13 seq252 87.8 1e-12 seq65 82.4 6e-11 >seq70 Length=414679 Score = 98.7 bits (108), Expect = 8e-16 Identities = 166/235 (71%), Gaps = 8/235 (3%) Strand=Plus/Plus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 ||||||||||| || || |||| |||||||| ||||||||| |||||||| || | | Sbjct 19320 CCTCCTCTCAGACGGAGAACCAAGTGAAGCGTCGACTCCTTCTGGATGTTGTAGTCCG-C 19378 Query 33961 AATTGTCGCT-CGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGG 34019 | ||| | |||| |||| ||||| ||||| || ||||| |||||||||||| ||| Sbjct 19379 GAGAGTCCTTCCGTCTTCCAGCTGCTTCCCGGCGAAGATCAGACGCTGCTGATCCGGCGG 19438 Query 34020 CACGCTCTCTTTGTCCATAATTTTTTGCTT--AATGGAACTC-ACACTATCAGTAGATTC 34076 | | || |||||| || || ||| || | || | |||| | ||||| Sbjct 19439 GATCCCTTCCTTGTCCTGGATCTTCGCCTTCACATTG---TCGATCGTATCCGACGATTC 19495 Query 34077 GCATTCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCATTTTT 34131 || | ||||| || || || ||||| |||||||| ||||| ||||| ||| Sbjct 19496 AACCTCTAGGGTTATCGTCTTCCCCGTTAGGGTTTTCACGAAGATCTGCATCTTT 19550 >seq73 Length=838620 Score = 96.9 bits (106), Expect = 3e-15 Identities = 89/113 (79%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 || ||||| |||| || ||||||||||| || ||| ||||| ||||||||||| ||| Sbjct 423068 CCACCTCTGAGCCTCAAGACCAGATGAAGAGTAGACTCTTTCTGGATGTTGTAATCCGCC 423009 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATC 34013 | | ||| | || |||| |||||| |||||||||||||| | |||||||| Sbjct 423008 AGTGTTCGTCCATCCTCCAGTTGCTTCCCGGCAAATATCAGCCTTTGCTGATC 422956 >seq69 Length=847923 Score = 91.5 bits (100), Expect = 1e-13 Identities = 101/135 (75%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 |||||||| |||| || |||| ||||||||| |||||||| |||||||| || || Sbjct 38661 CCTCCTCTAAGCCTAAGGACCAAATGAAGCGTCGATTCCTTCTGGATGTTGTAGTCGGCG 38602 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGC 34020 | | || | || |||| ||| || ||||| || ||||| |||||||||||| ||| Sbjct 38601 AGTGTCCGACCATCTTCCAGTTGTTTTCCGGCGAAGATCAGCCGCTGCTGATCCGGCGGG 38542 Query 34021 ACGCTCTCTTTGTCC 34035 | || || |||||| Sbjct 38541 ATGCCTTCCTTGTCC 38527 >seq252 Length=291119 Score = 87.8 bits (96), Expect = 1e-12 Identities = 101/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 33900 ACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGC 33959 |||||| | |||| |||||||||||||| || ||||||||| || |||||||| || Sbjct 179544 ACCTCCACGAAGCCTGAGCACCAGATGAAGAGTCGACTCCTTCTGGATATTGTAATCAGC 179603 Query 33960 CAATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGG 34019 |||| || |||| || | ||||| ||||| || |||| | |||||||||| || Sbjct 179604 CAATGTTCTGCCGTCCTCAAGCTGCTTTCCGGCGAAGATCAACCTCTGCTGATCCGGAGG 179663 Query 34020 CACGCTCTCTTTGTCC 34035 | || || |||||| Sbjct 179664 GATGCCTTCCTTGTCC 179679 >seq65 Length=625306 Score = 82.4 bits (90), Expect = 6e-11 Identities = 81/105 (77%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 33910 AGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCAATTGTCGC 33969 |||| || |||| ||||| || ||||||||| ||||||||||| |||||| || Sbjct 275569 AGCCTGAGGACCAAGTGAAGAGTCGACTCCTTCTGGATGTTGTAATCGGCCAATGTTCTG 275510 Query 33970 TCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCC 34014 |||| ||||| ||||| ||||| || || || | |||||||||| Sbjct 275509 CCGTCTTCCAACTGCTTTCCGGCGAAGATTAGCCTCTGCTGATCC 275465 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397029648307936