Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thlaspi_20arvense_20[genbank_20GCA_5F000956625.1_202015-03-19] 6,768 sequences; 343,012,389 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq69 152 1e-31 seq146 143 6e-29 >seq69 Length=847923 Score = 152 bits (168), Expect = 1e-31 Identities = 570/873 (65%), Gaps = 23/873 (3%) Strand=Plus/Plus Query 242875 TTCCCCATCCAGTATCCGGATATGTGGGATATGTATAAGAAGGCAGTGGCAACCTTTTGG 242934 ||||| || || || || | || ||||| ||||| |||||||| | ||| | |||||| Sbjct 356459 TTCCCGATTCACTACCCACAGATCTGGGAGATGTACAAGAAGGCCGAAGCATCGTTTTGG 356518 Query 242935 ACCACCGAGGAAGTTCCTCTGAACGCAG-ACG-TCGTCGACTGGCGCGAGAAACTCAATG 242992 || | |||||||| ||| | | ||| ||| ||| ||||||| ||||| ||||| | Sbjct 356519 ACGGCGGAGGAAGTCGATCT-ATCTCAGGACGGTCG-CGACTGG---GAGAATCTCAACG 356573 Query 242993 ACGACGAACGTCATTTCATCAAACACATTCTAGGTTTTTTCGCAGGCTCCGATGGTATTG 243052 ||| ||| || || |||||||||||| | || | || ||||| | ||| || || || | Sbjct 356574 ACGGCGAGCGGCACTTCATCAAACACGTCCTCGCCTTCTTCGCCGCCTCAGACGGAATCG 356633 Query 243053 TGATGGAAAATCT-GCAGACCAACTTTAGTGT-GGAAGTAACGGTTCCAGAGGCACGGCA 243110 | |||| ||||| || | | || ||| || || || | ||||| || Sbjct 356634 TTCTGGAGAATCTCGCTTCTCGA--TTCATGTCCGATGTTCAAGTCTCGGAGGCGCGTGC 356691 Query 243111 ATTTTATGCTTACCAAACATTCAACGAATCTATCCATTCTGAACAATATGCTCTTCTTAT 243170 || || | | ||| | | ||| |||||||| || || ||| || | Sbjct 356692 TTTCTACGGGTTCCAGATCGCGATCGAGAACATCCATTCCGAGATGTACAGTCTCCTCCT 356751 Query 243171 CGACGCGCTTATTTC-AGATGAACAA-GAGCGAAACGAGCT-TTTCGACGCCATCGAAAA 243227 ||| | |||| || || ||||| ||| || || | || ||||| ||| ||||||| Sbjct 356752 CGA--CACTTACATCAAGGACAACAAGGAGAGAGACCATCTGTTTCG-CGCAATCGAAAC 356808 Query 243228 CATTCCGGCGGTTCATAACAAGGCAAAATGGGCTCAGAAGTGGCTAGAACCCGGT--AAA 243285 ||| || || || ||||| | ||||| || |||| | || | | | | Sbjct 356809 CATCCCTTGCGTCGCGAAGAAGGCGCAGTGGGCGATGACGTGGATCGA--CGGATCCCAG 356866 Query 243286 TCATTTGCTGAGCGTCTCGTCGCCTGGGTGTGCGTTGAAGGTATTCTGTTTTCCGGGAGT 243345 | || || |||||| ||||||||| | ||||| ||||| || | || ||||| || Sbjct 356867 ACTTTCGCGGAGCGTATCGTCGCCTTCGCCTGCGTCGAAGGCATCTTCTTCTCCGGTAGC 356926 Query 243346 TTCTGCGCCATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTCGGTCTGTCTAAC 243405 |||||| | || || |||||| ||| || | ||||| || || | || ||| Sbjct 356927 TTCTGCTCGATTTTCTGGCTGAAGAAACGCGGGCTCATGCCGGGACTAACCTTCTCCAAC 356986 Query 243406 GAGTTCATCAGTCGCGACGAGGGCCTTCACCAACAGTTCG-GTGAGCTTATGTATTCAAA 243464 ||||| ||| ||| ||||| ||| | ||| | |||| ||| || || || | Sbjct 356987 GAGTTGATCTCTCGAGACGAAGGCTTGCACTGCGATTTCGCGTG-CCTCATCTACACTCT 357045 Query 243465 GCTCCAGAACAAGCTACCATTCGAAACGGTCAAACAAATCATCACAGAAGCAGTTGAAAA 243524 | | || ||||| | || || || ||| || || || || || | Sbjct 357046 GTTGAGGACGAAGCTCTCGGAGGAGCGCGTGAAGTCGATCGTCTGCGACGCCGTCGAGAT 357105 Query 243525 CGAAAAGGAATTCATTTGCGACGCTATTCCATGCCGGCTTATTGGCATGAACTCTGAACT 243584 ||| | ||| || | |||||||| |||| ||| | | | || |||||| || || Sbjct 357106 CGAGAGGGAGTTTGTGTGCGACGCGCTTCCCTGCGCGTTGGTGGGGATGAACCGGGACCT 357165 Query 243585 CATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTCATCGCGCTTGGTTATGAGAA 243644 ||| | ||||| |||||||| || || || | |||| |||||||| || | ||| Sbjct 357166 GATGAGCCAGTATATCGAATTTGTTGCGGATAGGCTTTTGGGTGCGCTTGGGTACGGGAA 357225 Query 243645 AGTGTACAACTCCAAGAACCCCTTTGCCTTTATGGAGCTCATTTCGCTTCAAGGGAAAAC 243704 |||||| ||| || |||| | |||||| | || |||||||| || ||||| Sbjct 357226 GGTGTACGGTGTGGCGAATCCGTTTGATTGGATGGAGTTAATCTCGCTTCAGGGTAAAAC 357285 Query 243705 TAACTTCTTCGAAAAGCGTGTCAGTGATTATCA 243737 ||||||||||| ||||| || ||||||| || Sbjct 357286 AAACTTCTTCGAGAAGCGAGTGGGTGATTACCA 357318 >seq146 Length=264749 Score = 143 bits (158), Expect = 6e-29 Identities = 571/880 (65%), Gaps = 34/880 (4%) Strand=Plus/Minus Query 242875 TTCCCCATCCAGTATCCGGATATGTGGGATATGTATAAGAAGGCAGTGGCAACCTTTTGG 242934 ||||| ||||| || || | || ||||| ||||| ||||| || | || | || ||| Sbjct 121564 TTCCCGATCCAATACCCACAGATCTGGGAGATGTACAAGAAAGCCGAAGCTTCTTTCTGG 121505 Query 242935 ACCACCGAGGAAGTTCCTCTGAACGCAGACGT-CGTCGACTGGCGCGAGAAA---CTCAA 242990 ||| |||| ||||| ||| | | ||| | | ||||||| || ||| || || Sbjct 121504 ACCGCCGAAGAAGTCGATCT-ATCTCAGGATTACCGCGACTGG---GAAAAAGCCCTAAA 121449 Query 242991 TGACGACGAACGTCATTTCATCAAACACATTCTAGGTTTTTTCGCAGGCTCCGATGGTAT 243050 ||||||||||| || ||| |||| ||| | || | ||| ||||| | || || || || Sbjct 121448 CGACGACGAACGGCACTTCGTCAAGCACGTCCTCGCTTTCTTCGCCGCATCTGACGGAAT 121389 Query 243051 TGTGATGGAAAATCTGCAGACCAACTTTAGTGTG-GAAGTAACGGTTCCAGAGGCACGGC 243109 || |||| ||||| || || | ||| || || || | ||||| || Sbjct 121388 CGTTCTGGAGAATCTATCTTCCCGGTTCA-TGTCCGATGTTCAAGTCTCCGAGGCTCGTG 121330 Query 243110 AATTTTATGCTTACCAAACATTCAACGAATCTATCCATTCTGAACAATATGCTCTTCTTA 243169 || || | | ||| | | ||| ||| || || || || ||| ||| Sbjct 121329 CCTTCTACGGATTCCAGATCGCGATCGAGAATATTCACTCCGAGATGTACAGTCTCCTTC 121270 Query 243170 TCGACGCGCTTATTTCAGATGAACAAGAGCGAAACGAGCTTTTCGACGCCATCGAAAACA 243229 |||| | || ||| | ||||| || | | || ||| ||| ||||||| || Sbjct 121269 TCGATACCTACATCAAAGACAACAAAGAGAGAGATCATCTCTTCCGCGCAATCGAAACCA 121210 Query 243230 TTCCGGCGGTTCATAACAAGGCAAAATGGGCTCAGAAGTGGCTAGAACCCGGTAAATCA- 243288 |||| || || | ||| |||||| ||| ||| | || ||| | ||| Sbjct 121209 TTCCCTGCGTCGCGAAAATGGCGCGATGGGCGATGAAATGGATCGA---CGG-ATCTCAG 121154 Query 243289 ---TTTGCTGAGCGTCTCGTCGCCTGGGTGTGCGTTGAAGGTATTCTGTTTTCCGGGAGT 243345 || ||||| ||| |||| || | | ||||| |||||||| | || ||||| || Sbjct 121153 AGCTTCGCTGAACGTATCGTGGCTTTCGCTTGCGTCGAAGGTATCTTCTTCTCCGGTAGC 121094 Query 243346 TTCTGCGCCATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTCGGTCTGTCTAAC 243405 |||||| | || || |||||| ||| |||| | |||||||| ||| | | || ||| Sbjct 121093 TTCTGCTCGATTTTCTGGCTGAAGAAACGAGGTTTAATGCCTGGGCTCACTTTCTCCAAC 121034 Query 243406 GAGTTCATCAGTCGCGACGAGGGCCTTCACCAACAGTTCGGTGAGCTTATGTATTCAA-A 243464 || || ||| || ||||| ||||||||| | |||| ||| | | || | | Sbjct 121033 GAATTGATCTCGCGAGACGAAGGCCTTCACTGCGATTTCG-----CTTGTTTGATCTACA 120979 Query 243465 G-CTCCA--GAAC-AAGCTACCATTCGAAA--CG-GTCAAACAAATCATCACAGAAGCAG 243517 | |||| || | ||||| || |||| || || ||| ||| | || || | Sbjct 120978 GTCTCCTTCGATCGAAGCT--CAG-CGAAGATCGAGTGAAATCGATCGTTCGTGATGCGG 120922 Query 243518 TTGAAAACGAAAAGGAATTCATTTGCGACGCTATTCCATGCCGGCTTATTGGCATGAACT 243577 | || | ||| | || || | |||||||| |||| ||| | | |||| |||||| Sbjct 120921 TCGAGATCGAGAGAGAGTTTGTGTGCGACGCGCTTCCTTGCGCGTTGGTTGGGATGAACC 120862 Query 243578 CTGAACTCATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTCATCGCGCTTGGTT 243637 ||| | ||| | ||||||||||||||||| || || || | | |||||||| | Sbjct 120861 GTGATTTGATGAGTCAGTACATCGAATTCGTGGCGGATCGGTTACTGGGTGCGCTTGGGT 120802 Query 243638 ATGAGAAAGTGTACAACTCCAAGAACCCCTTTGCCTTTATGGAGCTCATTTCGCTTCAAG 243697 | | || |||||| | || || |||| | ||||| | ||||||||||| | Sbjct 120801 ACGGTAAGGTGTACGGTGTGACTAATCCGTTTGATTGGATGGAATTGATTTCGCTTCAGG 120742 Query 243698 GGAAAACTAACTTCTTCGAAAAGCGTGTCAGTGATTATCA 243737 ||||||||||||||||||| ||| | ||| |||| ||||| Sbjct 120741 GGAAAACTAACTTCTTCGAGAAGAGAGTCGGTGAGTATCA 120702 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102784363760800