Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thlaspi_20arvense_20[genbank_20GCA_5F000956625.1_202015-03-19] 6,768 sequences; 343,012,389 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq69 138 1e-27 seq146 118 1e-21 seq1839 102 1e-16 seq522 98.7 1e-15 >seq69 Length=847923 Score = 138 bits (152), Expect = 1e-27 Identities = 385/580 (66%), Gaps = 13/580 (2%) Strand=Plus/Minus Query 126065 CCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGCATGAGACCCCGCTTC 126124 || ||||| || ||||| | || || |||||| ||||| |||||||| || || ||| Sbjct 357009 CCTTCGTCTCGAGAGATCAACTCGTTGGAGAAGGTTAGTCCCGGCATGAGCCCGCGTTTC 356950 Query 126125 TTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCCCTCCACACACGCGAAC 126184 |||| ||||||||||| || || ||| ||||||||||| || || || || ||||| Sbjct 356949 TTCAGCCAGAAAATCGAGCAGAAGCTACCGGAGAAGAAGATGCCTTCGACGCAGGCGAAG 356890 Query 126185 GCAAAGAGACGCTCAGCAAAGGAGCGCGACTTTGTGTCAAACCACTTCATCGCCCACTGC 126244 || | || |||||| || || | | || | ||| | |||| |||||||||||||| Sbjct 356889 GCGACGATACGCTCCGCGAAAGTCTGGGA---TCCGTCGATCCACGTCATCGCCCACTGC 356833 Query 126245 GCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTCAAAGAGTTCCT-TCTTTTCTGA 126303 ||||| ||| ||| || |||| ||| | ||| || ||| || | | ||| | || Sbjct 356832 GCCTTCTTCGCGACGCAAGGGATGGTTTCGATTGCGCGAAACAGATGGTCTCTCTCCTTG 356773 Query 126304 TGGATCTTTGATGTACTTATCTATGAGTTTTGAATATGTTTCGCCGTGGACCATTTCATT 126363 | | || |||||||| | || | ||| || | ||| |||| | || | Sbjct 356772 TTG-TCCTTGATGTAAGTGTCGAGGAGGAGACTGTACATCTCGGAATGGATGTTCTCGAT 356714 Query 126364 ATGGCACTGATACGCGTAGAAAGAGCGCGCTTCGCTTATCTGTACCTCATCGG-CA-AAA 126421 | ||| || ||||||||| ||||| || | || | |||||| || || Sbjct 356713 CGCGATCTGGAACCCGTAGAAAGCACGCGCCTCCGAGACTTGAA---CATCGGACATGAA 356657 Query 126422 TTG-TTATTGATATTCTCAAAAACAATTCCATCGGACCCAGCAAAAAACGCCAGGATATA 126480 | | | || |||||| | ||| ||||| || || | || || || || |||| | Sbjct 356656 TCGAGAAGCGAGATTCTCCAGAACGATTCCGTCTGAGGCGGCGAAGAAGGCGAGGACGTG 356597 Query 126481 CTTTATGAATTTCTGTTCATTCTCGTTCAGGGTCTTCCAGTCGTCAAGATCCTTCGAGAG 126540 || ||||| | | | || ||||| || ||| ||||||| | |||| || || Sbjct 356596 TTTGATGAAGTGCCGCTCGCCGTCGTTGAGATTCTCCCAGTCGCGACCGTCCTGAGATAG 356537 Query 126541 ATCTACCTCCTCCGCAGTCC-AATTGCTCATTTGAGCCTTCTTATAGAGTTCCCAAAGGT 126599 ||| || |||||||| |||| || | | || | |||||||| || | ||||| | | Sbjct 356536 ATCGACTTCCTCCGCCGTCCAAAACGATGCTTCG-GCCTTCTTGTACATCTCCCAGATCT 356478 Query 126600 GGGGATACTTCAGGGGGAACACTGTAAATCTGTTTAGGGT 126639 | || || | | ||||||| ||||||| | |||| Sbjct 356477 GTGGGTAGTGAATCGGGAACATACAGAATCTGTCTGGGGT 356438 >seq146 Length=264749 Score = 118 bits (130), Expect = 1e-21 Identities = 190/269 (71%), Gaps = 7/269 (3%) Strand=Plus/Plus Query 126058 GTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGCATGAGACC 126117 ||| || || ||||| || ||||| | ||| || ||||| || || ||||| | ||| Sbjct 121004 GTGAAGGCCTTCGTCTCGCGAGATCAATTCGTTGGAGAAAGTGAGCCCAGGCATTAAACC 121063 Query 126118 CCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCCCTCCACACA 126177 || ||||||| ||||||||||| || || ||| ||||||||||| || || || || Sbjct 121064 TCGTTTCTTCAGCCAGAAAATCGAGCAGAAGCTACCGGAGAAGAAGATACCTTCGACGCA 121123 Query 126178 CGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGCGACTTTGTGTCAAACCACTTCATCGC 126237 ||||| || | || ||| ||||| ||| | || | ||| | ||| |||||||| Sbjct 121124 AGCGAAAGCCACGATACGTTCAGCGAAGCTCTGAGA---TCCGTCGATCCATTTCATCGC 121180 Query 126238 CCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTCAAAGAGTTCCT-TCT 126296 ||| ||||| ||||| ||| || || | ||| | ||| || ||||| | | ||| Sbjct 121181 CCATCGCGCCATTTTCGCGACGCAGGGAATGGTTTCGATTGCGCGGAAGAGATGATCTCT 121240 Query 126297 -TTTCTGATGGATCTTTGATGTACTTATC 126324 | | || || ||||||||||| |||| Sbjct 121241 CTCTTTGTTG--TCTTTGATGTAGGTATC 121267 >seq1839 Length=44291 Score = 102 bits (112), Expect = 1e-16 Identities = 152/215 (71%), Gaps = 3/215 (1%) Strand=Plus/Minus Query 126065 CCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGCATGAGACCCCGCTTC 126124 || ||||| | || || | || || |||||| |||||| |||||||| | || ||| Sbjct 37020 CCTTCGTCTTGAGATATCAATTTGTTGGAGAAGGCCAGTCCCGGCATGAGTCTGCGTTTC 36961 Query 126125 TTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCCCTCCACACACGCGAAC 126184 |||||||||||||||| || || ||| ||||||||||| || || | || || || Sbjct 36960 TTCAACCAGAAAATCGAGCAGAAGCTACCGGAGAAGAAGATACCTTCGATGCAGGCAAAA 36901 Query 126185 GCAAAGAGACGCTCAGCAAAGGAGCGCGACTTTGTGTCAAACCACTTCATCGCCCACTGC 126244 | | || |||||| || ||| | | |||| | |||| || |||| |||||| Sbjct 36900 ACGACGATACGCTCCGC---GGAAATCTGAGATCTGTCGATCCACGTCTTCGCGCACTGC 36844 Query 126245 GCCTTTTTCTCGATACACGGGACGGTCTGGATCGC 126279 ||||| ||| ||| || |||| ||| | ||| || Sbjct 36843 GCCTTCTTCGTGATGCAAGGGATGGTTTTGATTGC 36809 >seq522 Length=218374 Score = 98.7 bits (108), Expect = 1e-15 Identities = 192/280 (69%), Gaps = 8/280 (3%) Strand=Plus/Minus Query 10876 AAAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCGCGTTCATCATTCGCGGG 10935 ||| ||||||||||||||||| || ||||| || || ||||| | ||||| || | Sbjct 161991 AAACCCATCCATCTCAGTCAACAGCTGATTAATCGTCTGTTCCCTCTCATCGTTTCC--T 161934 Query 10936 CATACCA--CCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCATCGATGAAAACGATA 10993 | | ||| || || | | |||| | || || |||||||| |||||||||||||| || Sbjct 161933 CCTCCCATCCCAGCTCCTCTTTGCCTTCCCACAGCGTCAATCTCATCGATGAAAACAATG 161874 Query 10994 CACGGTTGATTTTCACGGGCAACT--TCAAAGATATCTCGGACTCTCTTGGCACCGACAC 11051 || || |||| | | || || || | ||| | |||||| ||||| |||| Sbjct 161873 CAAGG--AGCTTTCGCCTTCGCCTTCTCGAACAGATCCCTGACTCTAGACGCACCCACAC 161816 Query 11052 CCACAAACATTTCCACAAAATTGGCGGCGGAACATTGGATGAAGGGGACGTTGGATTCAC 11111 | ||||| | |||||||| | | || | ||| || ||| || || | ||| | Sbjct 161815 CAACAAAAAGCTCCACAAACTCTGAAGCCGCGCATGAGAAGAACGGCACTCCTGCTTCTC 161756 Query 11112 CCGCGATGGCTCGGGCGAGGAGGGTCTTCCCCGTCCCAGG 11151 | || | |||| ||| | ||||||||| ||||| || || Sbjct 161755 CAGCCACCGCTCTGGCCAAGAGGGTCTTACCCGTACCGGG 161716 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597303063885440