Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thlaspi_20arvense_20[genbank_20GCA_5F000956625.1_202015-03-19] 6,768 sequences; 343,012,389 total letters Query= NC_011423.1 Length=111724 Score E Sequences producing significant alignments: (Bits) Value seq49 109 4e-19 seq986 96.9 2e-15 seq65 89.7 4e-13 seq442 82.4 5e-11 >seq49 Length=794425 Score = 109 bits (120), Expect = 4e-19 Identities = 163/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||||| || | | || ||||| | ||| || ||||| |||||||||||||| Sbjct 170240 CCACCTCTCAGACGGAGCACCAAATGCAAGGTTGATTCTTTCTGTATGTTGTAATCTGCA 170299 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 || ||| | || |||| |||||||||||| |||| | | ||| ||||| || Sbjct 170300 AGCGTTCGACCATCCTCTAGCTGTTTGCCAGCGAATATGAGTCTCTGCTGGTCCGGAGGG 170359 Query 15070 ATTCCTTCCTTGTCACAAAT-TTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTAC 15128 || ||||||||||| ||| ||||| || ||| | || ||||| || |||| || Sbjct 170360 ATCCCTTCCTTGTCTTGAATCTTTGC-CTTGACATTGTCAATAGTGTCCGAGCTTTCAAC 170418 Query 15129 GTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 || || || |||||||| ||||| ||||| || || || || |||||| Sbjct 170419 TTCCAATGTTATGGTTTTGCCTGTAAGAGTCTTGACGAAGATCTGCATA 170467 Score = 109 bits (120), Expect = 4e-19 Identities = 163/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 || |||| ||| || | ||| || || ||||| || ||||| || || |||||||| Sbjct 170696 CCTCCTCTCAACCTAAGAACCAAGTGCAGGGTTGATTCTTTCTGGATATTGTAATCTGCA 170755 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 ||| ||| | ||||| | || ||||| ||| | || | | ||| ||||| ||| Sbjct 170756 AGAGTTCGGCCATCTTCAAGCTGCTTGCCTGCGAAGATAAGCCTCTGCTGGTCCGGAGGA 170815 Query 15070 ATTCCTTCCTTGTCACAAAT-TTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTAC 15128 || ||||||||||| ||| ||||| || ||| | || ||||| || | || || Sbjct 170816 ATCCCTTCCTTGTCCTGAATCTTTGC-CTTGACATTGTCGATAGTGTCCGAGCTCTCAAC 170874 Query 15129 GTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 |||| ||| |||||||| ||||| || ||||| ||||| || |||||| Sbjct 170875 TTCTAGGGTGATGGTTTTGCCTGTAAGGGTTTTAACAAAGATCTGCATA 170923 Score = 100 bits (110), Expect = 2e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 || |||| ||| || | ||| || || ||||| || ||||| || || |||||||| | Sbjct 170468 CCTCCTCTCAACCTAAGAACCAAGTGCAGGGTTGACTCTTTCTGGATATTGTAATCAGCG 170527 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 ||| | | | ||||| | |||||||| ||| | || | | ||||||||| || Sbjct 170528 AGAGTGCGGCCATCTTCAAGCTGTTTGCCTGCGAAGATGAGTCTCTGTTGGTCCGGAGGG 170587 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 || ||||||||||| ||| || ||| ||| | || || || || | || || Sbjct 170588 ATCCCTTCCTTGTCTTGAATCTTAGCTTTAACATTGTCGATTGTGTCTGAGCTCTCAACT 170647 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 |||| ||| |||||||| || || || ||||| || || || |||||| Sbjct 170648 TCTAGGGTGATGGTTTTGCCAGTGAGGGTTTTGACGAAGATCTGCATA 170695 Score = 89.7 bits (98), Expect = 4e-13 Identities = 142/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 14974 TGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTGT 15033 ||||| || || || || |||||||||||||| ||| | | | || |||| ||| Sbjct 170036 TGAAGCGTTGACTCCTTCTGTATGTTGTAATCAGCAAGAGTGCGACCATCCTCTAGCTGT 170095 Query 15034 TTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTG 15093 ||||| ||| | || | | |||||| || || |||||||||||||| ||| || Sbjct 170096 TTGCCGGCGAAGATGAGTCTCTGTTGATCCGGAGGGATTCCTTCCTTGTCTTGAATCTTC 170155 Query 15094 CTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTC 15153 ||| ||| | || || || || | || || || || || ||||||||||| || Sbjct 170156 GCTTTAACATTGTCGATTGTGTCTGAGCTCTCCACTTCCAATGTTATGGTTTTACCGGTA 170215 Query 15154 AGAGTTTTTACAAAAATTTGCATA 15177 || || || ||||| || |||||| Sbjct 170216 AGGGTCTTGACAAATATCTGCATA 170239 Score = 87.8 bits (96), Expect = 1e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 || |||| || || | ||| || |||||||| || || ||||| || |||||||| Sbjct 170924 CCTCCTCTTAACCTAAGAACCAAGTGAAGGGTTGACTCCTTTTGGATATTGTAATCAGCC 170983 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 | | | | | || || | ||||| || || | |||| | |||||| || || Sbjct 170984 AAAGTACGGCCATCCTCGAGCTGTTTACCGGCAAAGATCAGCCTCTGTTGATCCGGAGGG 171043 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 |||||||| || || ||| || || ||| | || || ||||| | || || Sbjct 171044 ATTCCTTCTTTATCCTGAATCTTAGCCTTGACATTGTCGATGGTATCCGAGCTCTCAACT 171103 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 |||| ||| |||||||| || || || ||||| ||||||||||||||| Sbjct 171104 TCTAGGGTGATGGTTTTGCCAGTGAGGGTTTTAACAAAAATTTGCATA 171151 >seq986 Length=79754 Score = 96.9 bits (106), Expect = 2e-15 Identities = 148/211 (70%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 14967 AACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTC 15026 ||| ||||| || ||||| || || || ||||||||||| ||| | | | || || Sbjct 27391 AACAAAATGGAGAGTAGATTCCTTCTGAATGTTGTAATCCTCAAGAGTGCGACCATCCTC 27332 Query 15027 TAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACA 15086 | ||||| |||||||| || | | ||| ||||| ||| || ||||||||||| Sbjct 27331 GAGCTGTTTACCAGCGTAGATAAGTCTCTGCTGGTCTGGTGGGATCCCTTCCTTGTCTTG 27272 Query 15087 AATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTT 15146 ||| ||| | || ||| || || || || |||| || || | ||| ||||| || Sbjct 27271 AATCTTGGTCTTGACATCGTCAATGGTGTCTAAGCTTTCGACCTCAAGGGTTATGGTCTT 27212 Query 15147 ACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 ||||| ||||| || ||||| || |||||| Sbjct 27211 GCCTGTAAGAGTGTTGACAAAGATCTGCATA 27181 >seq65 Length=625306 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 14973 ATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTG 15032 |||||| || || || || || |||||||| ||| ||| | | ||||||| | || Sbjct 412941 ATGAAGCGTCGACTCCTTCTGGATGTTGTAGTCGGCGAGCGTGCGGCCGTCTTCCAGCTG 413000 Query 15033 TTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTT 15092 ||| || ||| | ||||| ||||| ||||| || |||||||||||||| || || Sbjct 413001 TTTCCCCGCGAAAATCAATCGCTGCTGGTCCGGCGGGATTCCTTCCTTGTCTTGGATCTT 413060 Query 15093 GCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGT 15152 ||| ||| | || || || || ||| || || | ||| ||||| || || || Sbjct 413061 CGCTTTGACATTGTCGATGGTGTCAGAGGATTCGACCTCAAGGGTTATGGTCTTCCCCGT 413120 Query 15153 CAGAGTTTTTACAAAAATTTGCATATTTG 15181 || ||||| || || || ||||| |||| Sbjct 413121 AAGGGTTTTCACGAAGATCTGCATCTTTG 413149 >seq442 Length=166222 Score = 82.4 bits (90), Expect = 5e-11 Identities = 146/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 14965 AAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCT 15024 || || || ||||| ||||| || || || |||||||| || | | ||| ||||| Sbjct 81313 AAGACCAAGTGAAGTGTAGACTCCTTCTGGATGTTGTAGTCAGCCAAAGTTCGGCCGTCT 81254 Query 15025 TCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCA 15084 || | ||| || || ||| | ||||| | ||| || || ||||| ||||||||||| Sbjct 81253 TCAAGTTGCTTTCCGGCGAAGATCAATCTCTGCTGATCCGGAGGAATACCTTCCTTGTCC 81194 Query 15085 CAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTT 15144 ||||| || || | || ||||| ||| | || || || || || ||||| Sbjct 81193 TGGATTTTAGCCTTCACGTTGTCAATAGTGTCGGAGCTCTCCACTTCCAAAGTGATGGTC 81134 Query 15145 TTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 || || |||| || || || || ||||||||| Sbjct 81133 TTTCCGGTCAACGTCTTGACGAAGATTTGCATA 81101 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 357362520520880